Information report for fgenesh2_kg.4__1925__AT2G38560.1
Gene Details
|
|
Functional Annotation
- Encodes RNA polymerase II transcript elongation factor TFIIS. Complements yeast TFIIS mutation. Mutant plants display essentially normal development, but they flower slightly earlier than the wild type and show clearly reduced seed dormancy.
Homologous
- Arabidopsis thaliana: AT2G38560
- Brassica napus: BnaA03G0185600ZS, BnaC03G0217700ZS, BnaC04G0079900ZS, BnaA05G0070500ZS
- Brassica oleracea: Bo3g032540, Bo4g027160
- Brassica rapa: Bra000069, Bra005095
- Gossypium hirsutum: Gohir.A09G213664, Gohir.D09G215100, Gohir.D10G112700, Gohir.A10G153500
- Manihot esculenta: MANES_08G170400
- Populus trichocarpa: POPTR_016G138100v3, POPTR_006G109300v3
- Vitis vinifera: VIT_08s0058g01410
Gene Resources
- Pfam: PF08711 PF01096 PF07500
- UniProt: D7LBP2
- RefSeq: XP_002879753.1
- EMBL: GL348716
- AlphaFoldDB: D7LBP2
- InterPro: IPR001222 , IPR003617 , IPR003618 , IPR006289 , IPR017923 , IPR035100 , IPR035441 , IPR036575
- PANTHER: PTHR11477 , PTHR11477:SF0
- SUPFAM: SSF46942 , SSF47676 , SSF57783
- PROSITE: PS00466 , PS51133 , PS51319 , PS51321
- Gene3D: 1.10.472.30 , 1.20.930.10 , 2.20.25.10
- CDD: cd00183 , cd13749
- eggNOG: KOG1105
- STRING: 81972.D7LBP2
- HOGENOM: CLU_037637_0_0_1
Sequences
gDNA Sequence
- >fgenesh2_kg.4__1925__AT2G38560.1
TATCTTGTTCGTCGCGACTCAAACGAGGTTCCGCCGATTATTATCCTTTTTCTCCATTCTTGAGAGATTTTGTTGGATTGTTTTTGTTCTGAGTCGTCTTGGATCTGTCGGTGTTGGTGCTTTGTTCTTGGAGCTAGGGATTTGAGGGACGATGGAAAGTGATTTGATTGGATTGTTCGAGGGAGCTAAGAAGGCAGCCGATGCGGCGGCTCTCGACGGTGTTGCTTCCTCAGGTCCTGAGGTTTCTCAATGTCTCGATGCCCTTAAACAGCTCAAGAAGTTTCCTGTCACATACGATACGCTCGTTGCGACTCAGGTGCGTTTCTGATTATCTCGTAACCCTAAAAAGATTTGATTATTTTGCATTTAGGTTAAAGTTTATATATTTCTCTTTTTCTGTTGATACGTTGTTAGATTGGAGGGTTTTTCTGGGTGTTGCTTGCTTAATCTCGTTGCATTGACTTGTGTTGTTGACCTTAGATTCTTAATTAGGGTTATTTGATTTCATCGGAAAAAGTTCACATAAATTTAAAAAGATTTAACTTTAAAAAGCTTGAGCTAACTGATTTGTATGAGACGCCCCGTTGAAATTATTGAAACAAACCCAATTTGGACATTGAACTCAGCTTGACATGCTAGGGTTAAGGGAAACAAACCCAATTTGGCACTTGATTTGTTTTACTTGAGGGTCATCAATGAATCAAGTCATGCGTTTTTTTTTTTTTTTGGTTGGGAAATTGTATTCAAGTGTTTCCTCTGGAATGTTGATAATGTGTGTATTGCTTTAGGGAAAGTTATATTCTTTTCTTGTTTCCAGGTGGGAAAAAAGCTGAGGTCTCTTGCAAAACACCCTATTGAGGAGATCAAAAGCGTAGCTACTGATTTGCTTGAGATATGGAAGAAAGTTGTCATTGGAGAGACAGCCAAGGCTAAGAAAACCGAAGGCACTAACGGTTGTAAAGCTGAAACTGTCAAAGAGGCTAAGGTGAATAAGATGGATGTTGATAAGCCTTCAAATCCTGCTCCTGTTAAAGTCCAGAAACTTCAGAGGGGTGATTCGGCTAAGAGTATCAAGGTTGAGAGAAAGGAACCAGACAATAAAGGCGTTACTGGTGTCAAGATAGAGAGAAAGGAACTAGACAACAAAGTCACTAATGGAACCAAGATAGATTATCGTGGTCAGGCTGTTAAGGATGAAAAGGTCTCAAAGGACAACCAATCAAGTATGAAAGCTCCAGCTAAGGCACCTAATGCTCCTCCAAAACTAACTGCAATGCTCAAATGCAATGATCCTGTGCGTGACAAAATCCGTGAGTTGCTTGTAGATGCGTTGTGCAGGGTTGCTGGAGAAGCTGATGACTATGAGAGAAAGTCAGTAAATGCTAGTGATCCACTCCGTGTTGCTGTCTCAGTGGAATCACTGATGTTTGAGAAATTGGGTCGCTCAACTGGAGCTCAGAAGCTTAAGTACAGATCTATAATGTTCAACCTGAGGGACGGTAACAACCCGGACTTAAGAAGGAGGGTTCTCACCGGGGAGATTTCACCAGAGAAACTCATCACATTGTCTGCTGAAGAAATGGCAAGCGACAAGAGGAAACAAGAGAACAATCAGATCAAAGAGAAAGCCCTGTTTGATTGCGAGCGTGGTCTTGCAGCAAAAGCATCTACCGACCAGTTCAAGTGCGGGCGGTGTGGTCAACGCAAATGCACCTACTATCAGATGCAAACAAGAAGTGCTGATGAGCCAATGACGACCTATGTTACATGTGTTAACTGTGACAACCACTGGAAGTTCTGTTAAGGAGATCTCTGTGTGTCTTTGTATTTCATGAGACCATGTTAAGACATAGAGGCTCTGATTGATTAATCAGGAGCTTCATGTCCATTTGCCATCATTCCGTGAATGTTCCGGCTCCGATGTTTGTTTTAAGGATATCATTCAATGTCTTAGAGATTAGTAAGTAGGGGTATTTACTAATTTAGGTGTTTGTAGCTCTTATTTCTTTTGCTTCTCTTCTTCCAAACTGTCAACTCAACTTTCTTGCAGATTTTACCAAGTTTTGAAGTTTATTT
CDS Sequence
- >fgenesh2_kg.4__1925__AT2G38560.1
ATGGAAAGTGATTTGATTGGATTGTTCGAGGGAGCTAAGAAGGCAGCCGATGCGGCGGCTCTCGACGGTGTTGCTTCCTCAGGTCCTGAGGTTTCTCAATGTCTCGATGCCCTTAAACAGCTCAAGAAGTTTCCTGTCACATACGATACGCTCGTTGCGACTCAGGTGGGAAAAAAGCTGAGGTCTCTTGCAAAACACCCTATTGAGGAGATCAAAAGCGTAGCTACTGATTTGCTTGAGATATGGAAGAAAGTTGTCATTGGAGAGACAGCCAAGGCTAAGAAAACCGAAGGCACTAACGGTTGTAAAGAGGCTAAGGTGAATAAGATGGATGTTGATAAGCCTTCAAATCCTGCTCCTGTTAAAGTCCAGAAACTTCAGAGGGGTGATTCGGCTAAGAGTATCAAGGTTGAGAGAAAGGAACCAGACAATAAAGGCGTTACTGGTGTCAAGATAGAGAGAAAGGAACTAGACAACAAAGTCACTAATGGAACCAAGATAGATTATCGTGGTCAGGCTGTTAAGGATGAAAAGGTCTCAAAGGACAACCAATCAAGTATGAAAGCTCCAGCTAAGGCACCTAATGCTCCTCCAAAACTAACTGCAATGCTCAAATGCAATGATCCTGTGCGTGACAAAATCCGTGAGTTGCTTGTAGATGCGTTGTGCAGGGTTGCTGGAGAAGCTGATGACTATGAGAGAAAGTCAGTAAATGCTAGTGATCCACTCCGTGTTGCTGTCTCAGTGGAATCACTGATGTTTGAGAAATTGGGTCGCTCAACTGGAGCTCAGAAGCTTAAGTACAGATCTATAATGTTCAACCTGAGGGACGGTAACAACCCGGACTTAAGAAGGAGGGTTCTCACCGGGGAGATTTCACCAGAGAAACTCATCACATTGTCTGCTGAAGAAATGGCAAGCGACAAGAGGAAACAAGAGAACAATCAGATCAAAGAGAAAGCCCTGTTTGATTGCGAGCGTGGTCTTGCAGCAAAAGCATCTACCGACCAGTTCAAGTGCGGGCGGTGTGGTCAACGCAAATGCACCTACTATCAGATGCAAACAAGAAGTGCTGATGAGCCAATGACGACCTATGTTACATGTGTTAACTGTGACAACCACTGGAAGTTCTGTTAA
Protein Sequence
- >fgenesh2_kg.4__1925__AT2G38560.1
MESDLIGLFEGAKKAADAAALDGVASSGPEVSQCLDALKQLKKFPVTYDTLVATQVGKKLRSLAKHPIEEIKSVATDLLEIWKKVVIGETAKAKKTEGTNGCKEAKVNKMDVDKPSNPAPVKVQKLQRGDSAKSIKVERKEPDNKGVTGVKIERKELDNKVTNGTKIDYRGQAVKDEKVSKDNQSSMKAPAKAPNAPPKLTAMLKCNDPVRDKIRELLVDALCRVAGEADDYERKSVNASDPLRVAVSVESLMFEKLGRSTGAQKLKYRSIMFNLRDGNNPDLRRRVLTGEISPEKLITLSAEEMASDKRKQENNQIKEKALFDCERGLAAKASTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVNCDNHWKFC