Information report for BnaA05G0070500ZS
Gene Details
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Functional Annotation
- Encodes RNA polymerase II transcript elongation factor TFIIS. Complements yeast TFIIS mutation. Mutant plants display essentially normal development, but they flower slightly earlier than the wild type and show clearly reduced seed dormancy.
Homologous
- Arabidopsis thaliana: AT2G38560
- Brassica oleracea: Bo4g027160, Bo3g032540
- Brassica rapa: Bra005095, Bra000069
- Gossypium hirsutum: Gohir.A09G213664, Gohir.D09G215100, Gohir.D10G112700, Gohir.A10G153500
- Manihot esculenta: MANES_08G170400, MANES_09G123400
- Populus trichocarpa: POPTR_016G138100v3, POPTR_006G109300v3
- Vitis vinifera: VIT_08s0058g01410
Gene Resources
- Pfam: PF08711 PF01096 PF07500
- UniProt: A0A078JA64
- RefSeq: XP_013748248.1
- EMBL: HG994359 , LK033912
- AlphaFoldDB: A0A078JA64
- KEGG: bna:106450961
- OMA: DACDPFR
- InterPro: IPR001222 , IPR003617 , IPR003618 , IPR006289 , IPR017923 , IPR035100 , IPR035441 , IPR036575
- PANTHER: PTHR11477 , PTHR11477:SF39
- SUPFAM: SSF46942 , SSF47676 , SSF57783
- PROSITE: PS00466 , PS51133 , PS51319 , PS51321
- Gene3D: 1.10.472.30 , 1.20.930.10 , 2.20.25.10
- OrthoDB: A0A078JA64
- SMR: A0A078JA64
- CDD: cd00183 , cd13749
- STRING: 3708.A0A078JA64
Sequences
gDNA Sequence
- >BnaA05G0070500ZS
CAACAGAACTTCCAGTGGTTGTCACAGTTGACACACGTAACATAAGTAGTCATCGGCTCATCAGCACTCCTCGTCTGCATCTGATAGTAAGTGCATTTACGCTGCCCACACCTCCCACACTTGAACTGATCAGTACTCGCTTTCGGCGCCTGGCCACGCTCACAATCAAACAGAAACTTCTCCTTGATCTGATTAGTCTCCTGTTTCCTCTTGTCGCTTGCCATCTCTTCACCAGACAATGTAATAAGTTTCTCCGGCGACACCTCCCCTGTGAGAACCCTCCTCCTCAGATCCGGATTGTTACTGTCCCTCAGGTTGAACATTATAGACCTGTACTTCACCTTCTGAGCTCCCGTTGACCGTCCCAGCTTCTCAAACATGTGAGACTCCACCGAGACAGCGACGCGGATTGGATCACATCCAACAACTCTCGCTCTATCGTAGTCATCTGATTCGTCATGGACCTTGGACATTGCGTCCACAAGCAGCTCACGGATCTTGTCACGCACAGGGTCGTTGCATTTCACCATCGAAGTCAGCTTTGGTGCACCATTAAGTGGTGCCTTAGCTGGAGCTTTCGTACTAGATTGATTCTCCTTTGAGGCCCCAGCATTGACTTTGTTGTCTCGTTCCTTCCTCTCTTCTACCTTGATGCTCTTAGCTGAATCACCTCTCTGAAGCTTCTGCACTTTCACAGGCGCTGGATTTGCATCCTTCCTGTCAAGCTTAGACTTGGATGTCTCTTCAATGACAAGTTTCTTCCATGTCTCAAGAAGATCAGTAGCTACGGTTTTTATTTCTTCAATAGGATGTTTTGAAAGAGACCTTAGCTTCTTCCCTACCTGGAAGCAATAACATGCTATTAGAGTGATTTTTAAATCTCTCTAACATTGTTTGAGCATAATGAGATTAGAATTAAAGATAAATCAGTTTTAATTTCCTGTGATTTTGAACCTCTCTAATATTGTTTGAGCATAATCACAATAAGCTTCATAAAGTTTTAATCTTTTCAATTTTTTTGAAAAGTTTCAGATGAGATTAATGAACCCTAACACAAGTCAATGCTATGAGATTAAGGCAAGCAACAGATGCAGAGAACCCTCTGATTCAAACAGCGTATTAGGCAAAAAAGATCGAGACTTTGTAGATTAAAGAGATGAAATTTGAAAAGAACCTGAGTCGCGACGAGCATGTCGTATGTGATGGGAAACTTCTTGAGCTGTTTAAGGGCGTCGAGAGATCGAGAAACCTCCGGACCTGAGGAGGTAACGCCGTCGATCGCCGCCGCATCGGCTGCCTTCTTCGCCGCCTCGAACAATTCGATCAATTCGCTTTCCAT
CDS Sequence
- >BnaA05G0070500ZS
ATGGAAAGCGAATTGATCGAATTGTTCGAGGCGGCGAAGAAGGCAGCCGATGCGGCGGCGATCGACGGCGTTACCTCCTCAGGTCCGGAGGTTTCTCGATCTCTCGACGCCCTTAAACAGCTCAAGAAGTTTCCCATCACATACGACATGCTCGTCGCGACTCAGGTAGGGAAGAAGCTAAGGTCTCTTTCAAAACATCCTATTGAAGAAATAAAAACCGTAGCTACTGATCTTCTTGAGACATGGAAGAAACTTGTCATTGAAGAGACATCCAAGTCTAAGCTTGACAGGAAGGATGCAAATCCAGCGCCTGTGAAAGTGCAGAAGCTTCAGAGAGGTGATTCAGCTAAGAGCATCAAGGTAGAAGAGAGGAAGGAACGAGACAACAAAGTCAATGCTGGGGCCTCAAAGGAGAATCAATCTAGTACGAAAGCTCCAGCTAAGGCACCACTTAATGGTGCACCAAAGCTGACTTCGATGGTGAAATGCAACGACCCTGTGCGTGACAAGATCCGTGAGCTGCTTGTGGACGCAATGTCCAAGGTCCATGACGAATCAGATGACTACGATAGAGCGAGAGTTGTTGGATGTGATCCAATCCGCGTCGCTGTCTCGGTGGAGTCTCACATGTTTGAGAAGCTGGGACGGTCAACGGGAGCTCAGAAGGTGAAGTACAGGTCTATAATGTTCAACCTGAGGGACAGTAACAATCCGGATCTGAGGAGGAGGGTTCTCACAGGGGAGGTGTCGCCGGAGAAACTTATTACATTGTCTGGTGAAGAGATGGCAAGCGACAAGAGGAAACAGGAGACTAATCAGATCAAGGAGAAGTTTCTGTTTGATTGTGAGCGTGGCCAGGCGCCGAAAGCGAGTACTGATCAGTTCAAGTGTGGGAGGTGTGGGCAGCGTAAATGCACTTACTATCAGATGCAGACGAGGAGTGCTGATGAGCCGATGACTACTTATGTTACGTGTGTCAACTGTGACAACCACTGGAAGTTCTGTTGA
Protein Sequence
- >BnaA05G0070500ZS
MESELIELFEAAKKAADAAAIDGVTSSGPEVSRSLDALKQLKKFPITYDMLVATQVGKKLRSLSKHPIEEIKTVATDLLETWKKLVIEETSKSKLDRKDANPAPVKVQKLQRGDSAKSIKVEERKERDNKVNAGASKENQSSTKAPAKAPLNGAPKLTSMVKCNDPVRDKIRELLVDAMSKVHDESDDYDRARVVGCDPIRVAVSVESHMFEKLGRSTGAQKVKYRSIMFNLRDSNNPDLRRRVLTGEVSPEKLITLSGEEMASDKRKQETNQIKEKFLFDCERGQAPKASTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVNCDNHWKFC