Information report for Lsa014565
Gene Details
Functional Annotation
- Refseq: XP_023742465.1 — trihelix transcription factor GT-2-like isoform X1
- TrEMBL: A0A2J6JWL0 — A0A2J6JWL0_LACSA; Uncharacterized protein
- STRING: XP_009618661.1 — (Nicotiana tomentosiformis)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Actinidia chinensis: Achn387251
- Artemisia annua: Aan017872
- Capsicum annuum: CA04g13540
- Daucus carota: DCAR_001133
- Juglans regia: WALNUT_00024662-RA, WALNUT_00012588-RA
- Medicago truncatula: Medtr1g098900.1
- Nicotiana benthamiana: Niben101Scf02361g07001.1, Niben101Scf01150g05007.1, Niben101Scf02902g03009.1
- Nicotiana tabacum: XP_016437883.1, XP_016514564.1, XP_016510083.1, XP_016452211.1
- Petunia inflata: Peinf101Scf00415g06003.1, Peinf101Scf04918g00007.1
- Solanum lycopersicum: Solyc12g056510.1.1
- Solanum melongena: Sme2.5_05186.1_g00001.1, Sme2.5_02039.1_g00002.1
Sequences
CDS Sequence:
- >Lsa014565|Lactuca_sativa|Trihelix|gnl|UG|Lsa#S58686540;PUT-187a-Lactuca_sativa-50751
ATGCTGCAGGGAGTTTCTCCAGGAATTGGAAACTCCGGCGAAGCAGCGGCGACTGCTGTTTCAGTTCAACCCAATGAAACGGCGGCGGCGTCCGCTGAACTTGCTAGTGGTGGTGGTGGCGGAGGATTTAGCGAAGATGAAAGAGGAAGAATTGAAGAAGGTGGTCGGAATTCCGGTGGAAATAGATGGCCAAGACAGGAAACGTTAGCTCTGCTTAAAATCCGGTCGGATATGGATGTCGCTTTTCGTGATTCAAGTCTGAAAGGTCCATTATGGGATGAGGTTTCAAGGAAATTAGCTGAGCTTGGCTATCATCGAAGTGCCAAAAAATGCAAAGAGAAATTCGAGAACGTTTATAAATACCACAAGAGAACCAAAGAAGGTCGAACTTCAAAAGCCGATGGAAAAACTTACAGATTTTTTGATCAATTACAAGCTTTAGAAGCCAACCCCACCGCCGGCAGCCACCACCAACAACCGCTGTCTCTTCCACCTCCTCAGCCGGTTCTCTCCAAACCACCACCACAAGTTTCTACAATGCCGAATACTTCCACAATTACACAAATTCTTCCATCTGTTGTAACTCCGGTAAATATCTCAGTCTCCCATCAAAACAACGTGGATCCAATCTCCGTTGCGGCGCCGGCGGTGGCAATGCCGTCGATGAATATTAATCACGTTGGTGGGTTTCCTTTTTCGCAACTGAATATTTCGGCGTCGACGAATTCGAGTTCTTCATCGACTTCTTCAGACGACGAGCCACCGGAGAGGAGGAGGAATAGGAAGCGGAAATGGAAGGAGTTTTTCGGGAGGTTGATGAAGGAGGTGATTGATAAACAAGAGGAATTACAATCAAAATTTCTTGATACGTTGGAAAGACGTGAACGTGATCGGATGGCGAGAGAGGAAGCATGGCGGATTCAAGAAATGGCGAAAATGAAACGAGAACACGATCCGTTGGTGCAGGAAAGATCCATGGTGGCGGCGAAAGATGCGGCGGTTATCACTTTTTTGCAGAAGATCACGGAACAAAACCCGAGTACTGTCATCCCACAAATGCCAGCTATGCAATTACTCCAACAACAACAACAACAAAACCAACCGCCTCCGCCGCTTCCACCACCATCGTCAGTACAACCGCCGCCACCAATGCAACAGCAACATCAACAACAATCCCAGCCACCACCACCACCACCACCGCAAGTACTACAACAACAACAACAACCAATTTCTCCGTTATCAGCAGCTGTACCATTACCGGCACCGGTATCTTTATCAACACCCGCTCCGCCACCGCCTGTGGTGAGGAATCTCGATAACGGCGGCGGAGGAGAGAACATGCTACAACCAAGTCCGTCGAGATGGCCGAAAGCTGAAATTAATGCACTGATTAAACTCCGAACGACGCTTGACACGAAATATCAAGAAAGTGGGCCCAAAGGGCCATTATGGGAGGAGATATCGTCGGCGATGAAGAAGCTTGGATACAACCGGAATGCTAAACGATGCAAAGAGAAATGGGAGAACATTAATAAATACTACAAGAAGGTTAAAGAAAGCAGCAAGAAACGACCCGAGGATTCGAAAACTTGCCCATATTTCCACCAGCTCGACGCCATTTACAGAGAGAAAGCAACCAGCAGTAACAACAATAATAATAATAATAGTAATCCAGCGTTCGCCGTTAAACCGGAAAACCAGATGGCTCCATCATGGGCTAGACCGGAACAGCAATGGCCACTTCCGGCGGTGGTTCAAGAACAACACCACCACCTCCAACAACAACATCACCACCACCAACAGCAGCAGCAGCAACAACAACAACAACGACATAATCAGCAGATGAAGACGAATGAATCTACAGGGATTGAAGATCACCAGCATGCGGATGATGACGACGATTACGACGAAGAAGATGAAGACGACGATGAGGAAGAAGGTGAAGGCGAAGGCGAAGGTGGTGAGTACGAGATTGTTCCAAACAAGACATCATCAATGGCTGCAGTTGANATGATGGAAATTTATAGACAGTGGAAATCGAACAAGCATTTGGGGTGCACTGCAAATGTGGGTCATGAGTTGCAGAAGATGTCAGATGGGTTCGCGGGTCGGGTTGCGGGTTGA
Protein Sequence:
- >Lsa014565|Lactuca_sativa|Trihelix|gnl|UG|Lsa#S58686540;PUT-187a-Lactuca_sativa-50751
MLQGVSPGIGNSGEAAATAVSVQPNETAAASAELASGGGGGGFSEDERGRIEEGGRNSGGNRWPRQETLALLKIRSDMDVAFRDSSLKGPLWDEVSRKLAELGYHRSAKKCKEKFENVYKYHKRTKEGRTSKADGKTYRFFDQLQALEANPTAGSHHQQPLSLPPPQPVLSKPPPQVSTMPNTSTITQILPSVVTPVNISVSHQNNVDPISVAAPAVAMPSMNINHVGGFPFSQLNISASTNSSSSSTSSDDEPPERRRNRKRKWKEFFGRLMKEVIDKQEELQSKFLDTLERRERDRMAREEAWRIQEMAKMKREHDPLVQERSMVAAKDAAVITFLQKITEQNPSTVIPQMPAMQLLQQQQQQNQPPPPLPPPSSVQPPPPMQQQHQQQSQPPPPPPPQVLQQQQQPISPLSAAVPLPAPVSLSTPAPPPPVVRNLDNGGGGENMLQPSPSRWPKAEINALIKLRTTLDTKYQESGPKGPLWEEISSAMKKLGYNRNAKRCKEKWENINKYYKKVKESSKKRPEDSKTCPYFHQLDAIYREKATSSNNNNNNNSNPAFAVKPENQMAPSWARPEQQWPLPAVVQEQHHHLQQQHHHHQQQQQQQQQQRHNQQMKTNESTGIEDHQHADDDDDYDEEDEDDDEEEGEGEGEGGEYEIVPNKTSSMAAVXMMEIYRQWKSNKHLGCTANVGHELQKMSDGFAGRVAG