Information report for CA04g13540
Gene Details
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Functional Annotation
- Refseq: XP_016569487.1 — PREDICTED: trihelix transcription factor GT-2-like
- TrEMBL: A0A1U8GDS5 — A0A1U8GDS5_CAPAN; Uncharacterized protein
- TrEMBL: A0A2G2ZPT7 — A0A2G2ZPT7_CAPAN; trihelix transcription factor GT-2-like
- STRING: XP_009618661.1 — (Nicotiana tomentosiformis)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Nicotiana benthamiana: Niben101Scf01150g05007.1, Niben101Scf02902g03009.1, Niben101Scf02361g07001.1
- Nicotiana tabacum: XP_016437883.1, XP_016452211.1, XP_016514564.1, XP_016510083.1, XP_016510084.1
- Petunia inflata: Peinf101Scf00415g06003.1, Peinf101Scf04918g00007.1
- Sesamum indicum: XP_011101538.1
- Solanum lycopersicum: Solyc04g071360.2.1, Solyc12g056510.1.1
- Solanum melongena: Sme2.5_02039.1_g00002.1, Sme2.5_05186.1_g00001.1
- Solanum tuberosum: PGSC0003DMP400041700
Sequences
CDS Sequence:
- >CA04g13540|Capsicum_annuum|Trihelix|CA04g13540
ATGCTAGGAGTTTCGGGCATCATAAGTGATGGTGATGGTACTGGAGGTGAAAATCCAGAAAGCGGTGGAGGCGGAGCAACAAGTGGAGGAAGTAGTGAGATTGGACTTGGCGGTGGCGGTGGTAGTAGCAGTGGTGGATTCATGATTGAAGAAGGCGAAAAAAATTCTGGAGGAAATAGATGGCCAAGACAAGAAACAATTGCTTTGCTCAAAATAAGGTCAGAGATGGACCATGTGTTTAGGGACTCAAGTCTTAAAGGACCCTTATGGGAAGAAGTTTCCAGGAAAATGGCTGACCTTGGGTATCACAGAAGTTCCAAGAAATGTAAGGAGAAATTCGAAAATGTTTACAAGTATCACAAGAGAACCAAAGATGGCCGTGCATCTAAGGCGGATGGCAAAAGTTATCGTTTTTTTGAACAATTGGAGGCGCTTGAAAACACACAGTCTCATCACTCGTTATTGCCACCGTCTAATTCGCGTCCCCCACCGCCTCCATTGGAAGCTACTCCTATAAATATGGCTATGCCAATGCCAACATCAAATGTACAAGTCCAAGCTTCACAAGGTACTGGTACTCCTCATCTTGTTACTGTTTCATCCACACCACCACCACCACCACCAAATATTCCTTTTGCGCCTTCTCATCAAAATGTTCAGTTGAGTTCTCCTGTGGCACCGTCATCACAACCAGCTGTCAATCCGATTAATAATATTCCTCATCAAGTGAATGCGAATCTGCCAGCTCATCAGAATATTTCGGCAATGTCGTATTCAACTTCTTCGTCCACTTCCTCGGATGAGGATATACAAAGAAGGCATAAGAAGAAGAGGAAATGGAAGGATTATTTTGAGAAGTTTACGAAGGATGTGATTAATAAGCAGGAGGAATCACAAAGGAAGTTCTTGGAGAAGTTTGAGCAGAAGGAACGCGATCGGATGGTTAGAGAAGAAACATGGAAAGCACAAGAAATGGCAAGACTGAATAGAGAACATGATCTTTTAGTCCAAGAAAGAGCAATGGCAGCAGCCAAAGATGCAGCAGTTATTTCTTTTTTACAGAAGATAACTGAACAGAAAAACATCCAAATTCCAAATAGTATCAATGTTGCTCTTCCATCAGCACAAGTACAATTACAAATGCCCGAAAACCCACCTCCTGCCCCCGCACCAACACATTCTCCTCAACCGCAACAACAGACACAACCGACTGTTGTAATATCACCAGCACCTCAACCATCACCAGCACTCGTGGTCCCGGTATCGTTGCCAATGACGATACCAGCTCCAGCACCAGCATTAATGCAGTCGCTGCCACTGACACCACCAGTACCAGCCAAGAACGTTGAACTAGCGCCAAAAAATGACAACGGAGGCGAGAGTCACAGTCCAGCAAGCTCTTCAAGGTGGCCTAAAGCAGAAGTTGAATCATTGATAAAACTTCGAACAAACTTAGATATGAAGTACCAAGAAAACGGACCGAAAGGTCCGCTCTGGGAAGAGATATCATCTTCAATGAAGAAAATTGGATACAACCGTAATGCCAAGAGGTGCAAAGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAAGTGAAAGAGAGCAGCAAGAAAAGACCAGAAGATTCCAAGACTTGCCCATATTTCCATATGCTCGACGCATTATACAAGGAGAAAGCCAAGAACGAAACTTCATCATTAACAAGTGGCTTCCCGTTAAACCCTGAAAACAACCCAATGGAACCCATCATGGCTCGTCCAGAACAACAGTGGCCTCTTCCACGACATCATCAGCAACACCAACACCACCAACAACATGAAAGTAGCCGAATGGACCATGATCATGACCACGAGAGTGACAACATGGACGAAGATGATCATGATGATGAGGATGAGGATGAAGACGAGGAGAATGCATATGAAATAGTGGCAAACAAGCAACAACCCTCAATGGCGAGCGCCAACACAACCACCACCACTGCGACCACAACAGTTTGA
Protein Sequence:
- >CA04g13540|Capsicum_annuum|Trihelix|CA04g13540
MLGVSGIISDGDGTGGENPESGGGGATSGGSSEIGLGGGGGSSSGGFMIEEGEKNSGGNRWPRQETIALLKIRSEMDHVFRDSSLKGPLWEEVSRKMADLGYHRSSKKCKEKFENVYKYHKRTKDGRASKADGKSYRFFEQLEALENTQSHHSLLPPSNSRPPPPPLEATPINMAMPMPTSNVQVQASQGTGTPHLVTVSSTPPPPPPNIPFAPSHQNVQLSSPVAPSSQPAVNPINNIPHQVNANLPAHQNISAMSYSTSSSTSSDEDIQRRHKKKRKWKDYFEKFTKDVINKQEESQRKFLEKFEQKERDRMVREETWKAQEMARLNREHDLLVQERAMAAAKDAAVISFLQKITEQKNIQIPNSINVALPSAQVQLQMPENPPPAPAPTHSPQPQQQTQPTVVISPAPQPSPALVVPVSLPMTIPAPAPALMQSLPLTPPVPAKNVELAPKNDNGGESHSPASSSRWPKAEVESLIKLRTNLDMKYQENGPKGPLWEEISSSMKKIGYNRNAKRCKEKWENINKYFKKVKESSKKRPEDSKTCPYFHMLDALYKEKAKNETSSLTSGFPLNPENNPMEPIMARPEQQWPLPRHHQQHQHHQQHESSRMDHDHDHESDNMDEDDHDDEDEDEDEENAYEIVANKQQPSMASANTTTTTATTTV*