Information report for DCAR_001133
Gene Details
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Functional Annotation
- Refseq: XP_017229597.1 — PREDICTED: trihelix transcription factor GT-2-like
- TrEMBL: A0A162B0Y3 — A0A162B0Y3_DAUCS; Uncharacterized protein
- STRING: Solyc12g056510.1.1 — (Solanum lycopersicum)
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Actinidia chinensis: Achn057421
- Citrus sinensis: orange1.1g006925m, orange1.1g006924m
- Glycine max: Glyma.20G166600.1.p
- Juglans regia: WALNUT_00024662-RA, WALNUT_00012588-RA
- Lactuca sativa: Lsa012697
- Medicago truncatula: Medtr1g098900.1
- Nicotiana benthamiana: Niben101Scf01150g05007.1, Niben101Scf02902g03009.1, Niben101Scf02361g07001.1
- Nicotiana tabacum: XP_016437883.1, XP_016514564.1, XP_016452211.1
- Petunia inflata: Peinf101Scf00415g06003.1, Peinf101Scf04918g00007.1
- Solanum lycopersicum: Solyc12g056510.1.1
- Solanum melongena: Sme2.5_05186.1_g00001.1, Sme2.5_02039.1_g00002.1
Sequences
CDS Sequence:
- >DCAR_001133|Daucus_carota|Trihelix|DCAR_001133
ATGTTGCAACAAGGTGGCGCTGCTGCTCCAGGTCTTATAGGCAGCTCTGCTGATACTACTGTGGCTGCTGCTGCTGCACCGGAAGCTCGTGAGCCTGGCGGCGGCGGCGGTGGAAGCGGTGGCAGTGGCGGCGGAATGAACGAGGAAGAAAAGGGAAGGAGTGAAGAAAGCGAGAGAAATTCCGGTGGCAGCCGGTGGCCGAGACAAGAAACGATTGCTTTGTTGAAAATCAGGTCTGACATGGATGTGGCCTTCCGAGACTCCAGTCTTAAAGGCCCATTATGGGACGAAGTCTCCAGGAAACTCTCGGAGCTTGGATATCATCGAAGCGCCAAGAAGTGTAAAGAGAAGTTTGAGAATGTTTACAAGTATCACAAGAGGACCAAAGATGGCCGGAATACAAAAAATGATGGCAAGACCTATCGGTTTTTCGAGCAATTAGAGGCTCTGGATACTCATCCTTCGCTGTCACTCATGTCGTGGTCGTCTCCGATGAAGTCACAGCCACCTTCAGCTCATCCGACCACAGTAGTCACGGCGGCGACAATGCTGGGACAACATAATAATAGTGCTCATATGAATACTATTGTGACTTCTTCACCAGTGGTTACCAATGTTACTGTTTCATCAACACCTAGCCCTATTTCTACTGTTTTTCCTAGTAATGCAATTCACCCCATCAACATCTCATCTCATAATGTTTCGTCTCAACCTCCGGTGGCGATGAATCCTTCAATTCCTGCTCAGAAGCCCATCGGATTGATGAATAATCATAACCCGAATATGAGTTTCCTGTCGAATTCAACGTCGTCTACTTCTTCGGATGAGCAGCCTGAGAGATACGGGAAGAGGAAGAGGAAGTGGGAGGACTTTTTCGGGAGGCTGATGACGGAGGTGATCCAGAAACAAGATGAGTTGCAGCAGAAGTTTTTGGACACATTGGAGAAACGAGAGAAGGAGCGGATAGCTAGAGAGGAAGCTTGGAGGGTACAAGAAATGGCGAAAATGAACCGGGAACATGAGCTTTTACTTCAAGAAAGATCCATGGCTGCGGCTAAAGATGCTGCGGTTATTTCATTTCTACAAAAGATCACTGAGCAGCAACAGCAGAATTCTCCCAACCAAGCCCAAGTCCAGCCTCCGCCAACACAGTTGCCTGTTGTTCCGCCTCCACAGCCTCTTGTACAAGTCTCACAACCGCATCCAATGCCACCGACACAAGCACCAGCACCGGTTATACTCACTCCTCAAGCTCCAGCTCCAGCTCCGACTCCAGTGAAAAGCCGAGACGAGATGAATGCACAATCATCAAACTACAATGGAGGAGCAGAAAATTCGAATTTCATGTCTCCAAGTCCTTCGAGATGGCCTAAAGCGGAAATCCAAGCCTTGATCAACTTCAGAACCACTCTTGACACAAAGTACCACGAAAACGGTCCAAAAGGCCCTCTCTGGGAGGAAATCTCCGCAGCCATGCGTAAAATTGGATACAACAGGAATGCCAAGAGATGCAAAGAGAAGTGGGAGAACATCAACAAATACTACAAGAAGGTGAAAGAAAGCAACAAGAAAAGGCCCGAGGATGCCAAGACCTGCCCTTACTTCCACCAGCTCGAGGCCTTATACAAAGAAAAGGCGAAAACCGAAACCTCCGGCTCCAACATCAACCTCTCATTCAACTCCACCCCAGTTCCAGCTGCATTGCCTATTATGGCTCAGCCTGAGCAACAATGGCCTCTCCAACAAAACAAGCTGATGCCCAAAGATCTCGATGACCACGACAGCGACAACATGAACGAGGACGACTACGAGGACGACGAGGACGACGACGACGGAGCTGCATTCGAGATCGTCACCAACACAAACAAGCAACAACAGGATCAAACAAGACCTGAATGA
Protein Sequence:
- >DCAR_001133|Daucus_carota|Trihelix|DCAR_001133
MLQQGGAAAPGLIGSSADTTVAAAAAPEAREPGGGGGGSGGSGGGMNEEEKGRSEESERNSGGSRWPRQETIALLKIRSDMDVAFRDSSLKGPLWDEVSRKLSELGYHRSAKKCKEKFENVYKYHKRTKDGRNTKNDGKTYRFFEQLEALDTHPSLSLMSWSSPMKSQPPSAHPTTVVTAATMLGQHNNSAHMNTIVTSSPVVTNVTVSSTPSPISTVFPSNAIHPINISSHNVSSQPPVAMNPSIPAQKPIGLMNNHNPNMSFLSNSTSSTSSDEQPERYGKRKRKWEDFFGRLMTEVIQKQDELQQKFLDTLEKREKERIAREEAWRVQEMAKMNREHELLLQERSMAAAKDAAVISFLQKITEQQQQNSPNQAQVQPPPTQLPVVPPPQPLVQVSQPHPMPPTQAPAPVILTPQAPAPAPTPVKSRDEMNAQSSNYNGGAENSNFMSPSPSRWPKAEIQALINFRTTLDTKYHENGPKGPLWEEISAAMRKIGYNRNAKRCKEKWENINKYYKKVKESNKKRPEDAKTCPYFHQLEALYKEKAKTETSGSNINLSFNSTPVPAALPIMAQPEQQWPLQQNKLMPKDLDDHDSDNMNEDDYEDDEDDDDGAAFEIVTNTNKQQQDQTRPE*