Information report for Achn057421
Gene Details
|
|
Functional Annotation
- Refseq: XP_028117969.1 — trihelix transcription factor GT-2-like
- Swissprot: Q39117 — TGT2_ARATH; Trihelix transcription factor GT-2
- TrEMBL: A0A2R6QYI9 — A0A2R6QYI9_ACTCH; Trihelix transcription factor GT-2 like
- STRING: XP_009618661.1 — (Nicotiana tomentosiformis)
- GO:0010192 — Biological Process — mucilage biosynthetic process
- GO:0044212 — Molecular Function — transcription regulatory region DNA binding
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Citrus sinensis: orange1.1g006925m, orange1.1g006924m
- Daucus carota: DCAR_001133
- Juglans regia: WALNUT_00024662-RA, WALNUT_00012588-RA
- Medicago truncatula: Medtr1g098900.1
- Nicotiana benthamiana: Niben101Scf01150g05007.1, Niben101Scf02361g07001.1, Niben101Scf02902g03009.1
- Nicotiana tabacum: XP_016437883.1, XP_016452211.1, XP_016514564.1, XP_016510083.1
- Petunia inflata: Peinf101Scf00415g06003.1
- Solanum lycopersicum: Solyc12g056510.1.1
- Solanum melongena: Sme2.5_05186.1_g00001.1
Sequences
CDS Sequence:
- >Achn057421|Actinidia_chinensis|Trihelix|Achn057421
ATGATAACAAAAGTCACAGAATTGACACTTTTTGAGGTCACGAAGAGAGAGAAGGAGCCCCTCATGCTGGGCGTTTCGGGCATGCTGGGGACCTCCGGCGACGGCGGCGAATTGGGAGGTGCCGGTGGGTTCAGCGAAGAAGACAAGATGAGAATTGAGGAAGGTGAACGGAATTCAGCCGGTAACCGTTGGCCACGCCTGGAGACGTTGGCGTTGTTGCAGATAAGGTCCGACATGGACGTTGCGTTTCGGGATTCGAACCTCAAAGGCCCATTATGGGAAGAAGTTTCGAGGAAGCTATCGGAGCTTGGCTACCACCGGAGCTCCAAGAAGTGCAAGGAGAAATTCGAGAACGTTTACAAGTACCACCGGAGAACCAAAGAAGGCCGGGTTTCGAAGCCTGACGGCAAGACTTACCGTTTTTTCGACCAATTAGAGGCCCTCGAGAACCAGGCCCCGCCCGTCCCGCCACTTCCCCCTCCACCCCGACCCCAAACCCATCCGGCCACCACTGCCACCAATCTGGCTGTGGCAATGCCGTCCGCCAACACAATTCCTCCGATTTTCTCTCACCTCACTGTTCCATCGACAACAGGACCTATAAGTGGCCCCCAAAGCACGACAATAATAAGTACGATAAGTCCACAGCCTCCGCCACCAGACACAACAATAGCTGCAACAATTTCAGCAGACCCCATAAGTTTCTCTTTCCACGGGGGCATAACTCCGTCTCACCTAAAAATGCCGGTGAATCTCGGATCCATGTCGATGTCGTCGTCTTCCTCCACCTCCTCGGACGAAGAGCCGGAAAGGCACCGGAAGAGGAAGAGGAAGTGGACCGACTTCTTCCAGAGGCTAATGAACAAAGTTGTCGAGAAGCAAGAGGAAATGCAAAAGAGGTTTATTGAATCGCTGGAGAGGCGCGAGCGGGACCGCGTGGCGAGAGAGGAGGCATGGAGAGCACAAGAAATCGCAAGAATGAACCGCGAGCACGACCTCCTTGTCCACGAGAGGTCCATGGCGGCCGCCAAAGACGCAGCCGTGATTGCTTTCTTACAAAAAGTGTCGGAACAGCAGGTCCCCAGTGCACCCTCAGTGCAGATGCAAAACAATTCACAACCACCGCCACCAAAGCCAACTCCACTGCCGCAATCTCAATTAGAACTAGAGATCCCACAACTACCACCGCTACCTCCACAGCCTCCCCCACAACCACTAGTACAAGTACAAGTACCACCACCCCCGAAGAGTCCGAAAACGGACAACAACAGTGGTGAGAACATCATATCGTCAATCACAAGCTCGTCGAGATGGCCGAAAGCAGAAGTTCAAGCCCTAATACGGCTCCGAACCAATATGGATCTAAAGTACCAAGAGAACGGCCCCAAAGGGCCCTTGTGGGAGGAGATATCATCGGCAATGCGAAAGATTGGCTACGATCGGAACGCCAGGAGGTGCAAGGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAGGTGAAGGAGAGCAACAAAAAACGGCCCGAAGATTCGAAGACTTGTCCCTACTTTCACGATCTCGATGTTCTGTACAGAGAGAAAGCTAAGAATGAGACTACTAATAATTTGGGCTCTGGGTTTGGGGTGAAGATGGAGAATCCTATGGCGCCGATAATGGTGCAGCCGGAGCAGCAGTGGCCACTTCTGCAGCGGCATCCGGAATCCGCCGTGGAAGACGAAGAGAGCGATCAGAATAACGAGGGCGACCATGAGAGCGATGATGAGGATGATGAGGATGAGGATGACGAAGTGGGTGGCTATGAGATTGTGGCAAACAAGCCATCTTCAGTGGGCGCAGTTGAGTGA
Protein Sequence:
- >Achn057421|Actinidia_chinensis|Trihelix|Achn057421
MITKVTELTLFEVTKREKEPLMLGVSGMLGTSGDGGELGGAGGFSEEDKMRIEEGERNSAGNRWPRLETLALLQIRSDMDVAFRDSNLKGPLWEEVSRKLSELGYHRSSKKCKEKFENVYKYHRRTKEGRVSKPDGKTYRFFDQLEALENQAPPVPPLPPPPRPQTHPATTATNLAVAMPSANTIPPIFSHLTVPSTTGPISGPQSTTIISTISPQPPPPDTTIAATISADPISFSFHGGITPSHLKMPVNLGSMSMSSSSSTSSDEEPERHRKRKRKWTDFFQRLMNKVVEKQEEMQKRFIESLERRERDRVAREEAWRAQEIARMNREHDLLVHERSMAAAKDAAVIAFLQKVSEQQVPSAPSVQMQNNSQPPPPKPTPLPQSQLELEIPQLPPLPPQPPPQPLVQVQVPPPPKSPKTDNNSGENIISSITSSSRWPKAEVQALIRLRTNMDLKYQENGPKGPLWEEISSAMRKIGYDRNARRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHDLDVLYREKAKNETTNNLGSGFGVKMENPMAPIMVQPEQQWPLLQRHPESAVEDEESDQNNEGDHESDDEDDEDEDDEVGGYEIVANKPSSVGAVE*