Information report for AHYPO_007595-RA
Gene Details
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Functional Annotation
- Refseq: XP_021848795.1 — trihelix transcription factor GTL1
- Swissprot: Q39117 — TGT2_ARATH; Trihelix transcription factor GT-2
- TrEMBL: A0A0K9RCU7 — A0A0K9RCU7_SPIOL; Uncharacterized protein
- STRING: Solyc12g056510.1.1 — (Solanum lycopersicum)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Capsicum annuum: CA04g13540
- Daucus carota: DCAR_001133
- Juglans regia: WALNUT_00012588-RA, WALNUT_00024662-RA
- Nicotiana benthamiana: Niben101Scf01150g05007.1, Niben101Scf02902g03009.1, Niben101Scf02361g07001.1
- Nicotiana tabacum: XP_016437883.1, XP_016452211.1, XP_016514564.1
- Petunia inflata: Peinf101Scf00415g06003.1
- Populus trichocarpa: Potri.002G068600.1
- Solanum lycopersicum: Solyc12g056510.1.1, Solyc04g071360.2.1
- Solanum melongena: Sme2.5_02039.1_g00002.1, Sme2.5_05186.1_g00001.1
Sequences
CDS Sequence:
- >AHYPO_007595-RA|Amaranthus_hypochondriacus|Trihelix|AHYPO_007595-RA
ATGCTGGGTACTTCTAATACTTTATTAGGAAGTTCCGGTGACGACGGCGGTGGTGGTGGTGGTAGTGGTAGCGGTGGTAAAGGTGAAGTCTCCGGTGTGGGTCCTACAACTATGACTGCCATGGGAGATGAAGATAAAGGAATAAGTGGAGCTGATTTATTTGAAGGTGACCGGAGTACAGGCGGTAACCGGTGGCCTAGACAAGAAACTCTTGCTTTGCTTAAGATAAGGTTTGATATGGATGGTGTTTTCCGTGATTCTTCTCTTAAAGGTCCTTTGTGGGAAGAAGTTTCCAGAAAAATGGCGGAGCTTGGATATCATCGAAGTGCAAAAAAATGCAAAGAAAAATTTGAAAATGTGTATAAATACCATAAAAGAACTAAAGATGGAAGAGTTGGGAAATCTGATGGTAAGACGTATCGATTTTTTGATCAATTAGAAGCACTTGAACAACACCATTTATCTTTACCACCACCTTTACCCCAACAATCTGGGCCGCACGTGACACCACGAGCGGCGGCGCAGATATCGCAGGCACCACCGCAAGCGGCGGTGCCTGTAACAATGGTAATACCAGCTGGTACGAATCCAGCTAATATTACTGTTACTGTTCCATCAAGCCCACATCATAATATTCCAATAAGTGTTGGTTCTATAAACCCATCGCAACAACAGATGAATTTGGTACAACAGCAGCAGAATCCGGCAATGGCGGCGATTCCGACGCATAGTTCGATTCAGATGGAGAACGCGTCGTCTCCGTCGGCAACGCAGTCGTCGTCGTCGTCGACATCGTCGGATGAGGAATTGTTGGGGAGGAGGAAAAGGAAGAGGAAATGGAAGGATTTTTTTGAGAGGTTGATGAAGGAAGTGATTGATAAACAAGAGGAATTACAGAAGAAGTTTCTAGAAGCTGTTGAGAAAAGAGAACATGATAGAGCTGCTAGAGAAGAAGGTTGGAAAATGCAAGAAATGGCGAGATTGAATCGTGAACATGATATTCTTGTTCAAGAACGTTCCATGGCTGCTGCTAAAGATGCTGCTCTTATTGCTTTTCTTCAAAAACTTTCCGATCAACAACAGATTCCTCTTCCTGTTCCGATCCAAACCCAAACCCAAACCCAAACCCATACCCAACCCGAATCTCAATCACAATCACAATCACAACCCCAGATTCGAGTGGCGGTGCCGGCAGTAGCGCCGCCAATCACCCCGACTCAACCACAATCAGTATCGTTGTCGCCGCAACCATTGCAACAGATAATGCCTCAGCCGCCGCCAGCGCCACAACCACAACCGCCACAACCGCAACCACAGCATAAAATTCAGGCGCAAGAAATTCCGGTGACATTACCGTCACCAACACAACCACAGCCATTGAATCAGTTACAGCAGCAAGCTATGGTGGTGGTGGAGAAGATGAATAATAATGGGGACAATGTAGAGCTTCAAAAGGGTAACAATGGAGATAAAGATAATCTTCAAGCAAGTTCATCAAGATGGCCAAAAGCAGAGGTGCAAGCACTGATAAATCTGAGAACAAGTCTAGATCAAAAGTATCAAGAAAACGGGCCGAAAGGCCCGTTGTGGGAAGAGATCTCATCTGCCATGAAAAAACTGGGTTACAATCGGAATGCGAAGAGATGCAAAGAAAAATGGGAAAACATCAACAAATATTTCAAGAAAGTGAAGGAAAGCAACAAGAAACGTCCAGAAGATTCCAAAACTTGCCCGTATTTCCATCAATTAGATGCACTTTACAGAGAGAGAAACAAGATGGAAATCAATTCACCAAACCCAGTATCAGTTCCAATGGCAATAAGTTATGGGCAACAACAAATGAAGAATAATGAAGCTCCAATAATGGCGGAACCTGAACAACAATGGCCGCCAATCCATCACGGAGATCAAACAATGGAGGAACAAGGAAGTGATACAGAAGATGATGGTGATGATGAAGAAGATGATGATCAAGGAAATGGGTATGAAATTGTGGCTAATAACATTGTTAATGCAGGTTCAATGAACACCCCAACTACCGCCTCAAGAACTGCAACTGCTGAGTGA
Protein Sequence:
- >AHYPO_007595-RA|Amaranthus_hypochondriacus|Trihelix|AHYPO_007595-RA
MLGTSNTLLGSSGDDGGGGGGSGSGGKGEVSGVGPTTMTAMGDEDKGISGADLFEGDRSTGGNRWPRQETLALLKIRFDMDGVFRDSSLKGPLWEEVSRKMAELGYHRSAKKCKEKFENVYKYHKRTKDGRVGKSDGKTYRFFDQLEALEQHHLSLPPPLPQQSGPHVTPRAAAQISQAPPQAAVPVTMVIPAGTNPANITVTVPSSPHHNIPISVGSINPSQQQMNLVQQQQNPAMAAIPTHSSIQMENASSPSATQSSSSSTSSDEELLGRRKRKRKWKDFFERLMKEVIDKQEELQKKFLEAVEKREHDRAAREEGWKMQEMARLNREHDILVQERSMAAAKDAALIAFLQKLSDQQQIPLPVPIQTQTQTQTHTQPESQSQSQSQPQIRVAVPAVAPPITPTQPQSVSLSPQPLQQIMPQPPPAPQPQPPQPQPQHKIQAQEIPVTLPSPTQPQPLNQLQQQAMVVVEKMNNNGDNVELQKGNNGDKDNLQASSSRWPKAEVQALINLRTSLDQKYQENGPKGPLWEEISSAMKKLGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYRERNKMEINSPNPVSVPMAISYGQQQMKNNEAPIMAEPEQQWPPIHHGDQTMEEQGSDTEDDGDDEEDDDQGNGYEIVANNIVNAGSMNTPTTASRTATAE*