Information report for Bra004396
Gene Details
Functional Annotation
- CDF5 is a circadian regulated transcript that is antiphasic with respect to its natural antisense transcript (NAT) FLORE (AT1G69572).CDF5 transcript accumulation delays flowering. CDF5 links circadian oscillation and photoperiodism.
Homologous
- Arabidopsis thaliana: AT1G69570.1
- Brassica napus: GSBRNA2T00030041001, BnaA07G0310700ZS, GSBRNA2T00101928001, BnaC06G0360900ZS, GSBRNA2T00112897001, GSBRNA2T00067590001, BnaC06G0306600ZS, GSBRNA2T00124299001
- Brassica oleracea: XP_013588756.1, Bo6g109100, XP_013588706.1, Bo6g095390
- Raphanus raphanistrum: RrC4340_p1, RrC6041_p2
Gene Resources
- Pfam: PF02701
- UniProt: A0A078K3J8
- RefSeq: XP_013649384.1
- EMBL: HG994361 , LK051283
- AlphaFoldDB: A0A078K3J8
- KEGG: bna:106354080
- OMA: QWLEAPI
- InterPro: IPR003851 , IPR045174
- PANTHER: PTHR31089 , PTHR31089:SF78
- PROSITE: PS01361 , PS50884
- OrthoDB: A0A078K3J8
- STRING: 3708.A0A078K3J8
Sequences
gDNA Sequence
- >Bra004396
TATTGCTGCATGCTCTCCCTGAAGTTCATAGATCTAGACATCGCTGCAGGGTTTTCTTGTAGATTGATAGACGTTTCAGGGACCAAGCTTCTTCTGTTGCTACCCTTTGTTTCAAATCTATTGAACAAACTTAATCCTCCTTCCGTATTCTTCTCAGGCTTTGTTGGTAACTCAGGGTACACCACGTTCTTAGTAGCTTCACTAGTTCTAAGAGTAGTATTTTTGGTTTCTACTTCAGTTTGATCCCTTGCTCGTTTCCCTAAACATGGTGAAGTCTCTGAGATAGGCCATATAGGAACCGTGCAGCCCCAATAGAAAGGGATAGGGTAGAAACTAGTATTAGGACCCGTTGGACTCCATTGGTAAGGCCAAGGAGAAGTATTATTAGGTAACATTACTTGGGAAGCAAGAAACTCTTGGTGGGTTTTGTTTTCTTGATGCTTAACAGTCTCTGTAACCGAAGACTCTGAAGAACCAAAACTGAGGATCGTTCCCGAGTTATTGTTGTTCTCATAATCCTCAGACGTGACCTTCAAGTAATGGTTTGAACAAGGCCACCCTTTGTTCTTGCGGCGGCCTGATCCAACGGGGACGTTTCTCATGGATCCACCAGCTGTCCAGTACCTCTGACAGTTCCTGCAGAAGTGACGCGGCTGGCTCACGTTGTAGTTGTTGTAGTAACAGAACTTGGTGTTTGCGCTTTCGCATCTCGGACACGGAAGAAGCTTGTCCGGTTTCTTGAGAGTAGTTGGTTTATCTTCTGATGTACTTGTTGTTGTTGTTGTGATCTCGCTCTGTTGATCCCCGTTGGTCTTTGAGCTTGTTGGTGATGAAATCTCAAAAGCTGCTCTTGGCGGTTCGTTAAGATCGGATAATATGCAAGGACCTTTGAATCTGCTATTGCCGTGCTCATGGTTATTAGCCAGAACCTAAAATTTTAGCACAACTTTATTATAACTAGCCACAGCTTTGTCTTAACGGATATATATTATTACTACAAAACAGAGGAGTTTGAAAAAAAAAAAAGAAAAAAAAAGGAGGTTGAAAAAAAAAAAGAACAAAAAAGGAGTTCGAACAAAAAGGACTTTGAGATTTGCGTGACAGCATACCATGTTTGGTCCGGTCGAAGGACAACAAGAGGATGAGGAAGATGAAGAAGGCTCCTTGCTCTGATAGGACACACCGTGAATAGAAGATAACGACGACGGATCATGATGATCCACAGCTAAAAGAGATGTAATTGTCGTCCCAAACAATTTTATCTCCGTATCTTTAGATTTCGACAT
CDS Sequence
- >Bra004396
ATGTCGAAATCTAAAGATACGGAGATAAAATTGTTTGGGACGACAATTACATCTCTTTTAGCTGTGGATCATCATGATCCGTCGTCGTTATCTTCTATTCACGGTGTGTCCTATCAGAGCAAGGAGCCTTCTTCATCTTCCTCATCCTCTTGTTGTCCTTCGACCGGACCAAACATGGTTCTGGCTAATAACCATGAGCACGGCAATAGCAGATTCAAAGGTCCTTGCATATTATCCGATCTTAACGAACCGCCAAGAGCAGCTTTTGAGATTTCATCACCAACAAGCTCAAAGACCAACGGGGATCAACAGAGCGAGATCACAACAACAACAACAAGTACATCAGAAGATAAACCAACTACTCTCAAGAAACCGGACAAGCTTCTTCCGTGTCCGAGATGCGAAAGCGCAAACACCAAGTTCTGTTACTACAACAACTACAACGTGAGCCAGCCGCGTCACTTCTGCAGGAACTGTCAGAGGTACTGGACAGCTGGTGGATCCATGAGAAACGTCCCCGTTGGATCAGGCCGCCGCAAGAACAAAGGGTGGCCTTGTTCAAACCATTACTTGAAGGTCACGTCTGAGGATTATGAGAACAACAATAACTCGGGAACGATCCTCAGTTTTGGTTCTTCAGAGTCTTCGGTTACAGAGACTGTTAAGCATCAAGAAAACAAAACCCACCAAGAGTTTCTTGCTTCCCAAGTAATGTTACCTAATAATACTTCTCCTTGGCCTTACCAATGGAGTCCAACGGGTCCTAATACTAGTTTCTACCCTATCCCTTTCTATTGGGGCTGCACGGTTCCTATATGGCCTATCTCAGAGACTTCACCATGTTTAGGGAAACGAGCAAGGGATCAAACTGAAGTAGAAACCAAAAATACTACTCTTAGAACTAGTGAAGCTACTAAGAACGTGGTGTACCCTGAGTTACCAACAAAGCCTGAGAAGAATACGGAAGGAGGATTAAGTTTGTTCAATAGATTTGAAACAAAGGGTAGCAACAGAAGAAGCTTGGTCCCTGAAACGTCTATCAATCTACAAGAAAACCCTGCAGCGATGTCTAGATCTATGAACTTCAGGGAGAGCATGCAGCAATAA
Protein Sequence
- >Bra004396
MSKSKDTEIKLFGTTITSLLAVDHHDPSSLSSIHGVSYQSKEPSSSSSSSCCPSTGPNMVLANNHEHGNSRFKGPCILSDLNEPPRAAFEISSPTSSKTNGDQQSEITTTTTSTSEDKPTTLKKPDKLLPCPRCESANTKFCYYNNYNVSQPRHFCRNCQRYWTAGGSMRNVPVGSGRRKNKGWPCSNHYLKVTSEDYENNNNSGTILSFGSSESSVTETVKHQENKTHQEFLASQVMLPNNTSPWPYQWSPTGPNTSFYPIPFYWGCTVPIWPISETSPCLGKRARDQTEVETKNTTLRTSEATKNVVYPELPTKPEKNTEGGLSLFNRFETKGSNRRSLVPETSINLQENPAAMSRSMNFRESMQQ