Information report for Bo6g109100
Gene Details
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Functional Annotation
- CDF5 is a circadian regulated transcript that is antiphasic with respect to its natural antisense transcript (NAT) FLORE (AT1G69572).CDF5 transcript accumulation delays flowering. CDF5 links circadian oscillation and photoperiodism.
Homologous
- Arabidopsis thaliana: AT1G69570.1
- Brassica napus: GSBRNA2T00112897001, BnaC06G0360900ZS, GSBRNA2T00101928001, BnaA07G0310700ZS, GSBRNA2T00030041001, GSBRNA2T00067590001, BnaC06G0306600ZS, GSBRNA2T00124299001
- Brassica rapa: XP_009105511.1, Bra004396, XP_009104997.1, Bra003994
- Raphanus raphanistrum: RrC4340_p1, RrC6041_p2
Gene Resources
- Pfam: PF02701
- UniProt: A0A0D3CZB0
- RefSeq: XP_013588756.1
- AlphaFoldDB: A0A0D3CZB0
- KEGG: boe:106297026
- OMA: HDNSRFK
- InterPro: IPR003851 , IPR045174
- PANTHER: PTHR31089 , PTHR31089:SF78
- PROSITE: PS01361 , PS50884
- OrthoDB: A0A0D3CZB0
- eggNOG: ENOG502QSI8
- STRING: 109376.A0A0D3CZB0
- HOGENOM: CLU_030533_1_1_1
Sequences
gDNA Sequence
- >Bo6g109100
TATTGTTGCATGCTTTCCCTGAAGTTCATAGATCTAGACATCGCTGCAGGGTTTGCTTGTAGATTGATAGACGTTTCAGGGACCAAGCTTCTTCTGTTGCTACCCTTTGTTTCAAATCCATTGAACAAACTTAATCCTCCTTCCATTTTCTTCTCAGGCTTTGTCGGTAGCTTAGGCCACACCACGTTCTTAGTAGCTTCACTAGTTCTAAGAGTGGTATTTTTGGTTTCTACTTCAGTTTCATCCCTTGATCGTTTCCCTAAACATGGTGAAGCCTCTGAGGTAGGCCACATAGGAACCGTGCAGCCCCAATAGAAAGGGATAGGGTAGAAACTAGTATTACGACCCGTTGGACTCCATTGGTAAGGCCAAGGAGAAGTATTATTAGGTAACATTACTTGCGAAGCAAGAAACCCTTGGTGTGTTTTGTTTTCTTGATGCTTACCAGTCTCTATGACGGAAGACTCTGAAGAACCGAAACTGAGGATCGTTCCCGAGTTATTGTTGTTCTCATAATCATCAGACGTGACCTGCAAGTAATGGTTTGAAGAAGCCCACCCTCTGTTCTTGCGGCGGCCTGAGCCAACGGGGACGTTTCTCATGGATCCACCAGCTGTCCAGTACCTCTGACAGTTCCTGCAGAAGTGACGCGGCTGGCTCACGTTGTAGTTGTTGTAGTAACAGAACTTGGTGTGCGCGCTTTCGCATCTCGGACACGGTAGAAGCTTGTCCGGTTTCTTGAGAGTAGTTGGTTTATCTTCTGATGTACTTGTTGTTGTTGTTGTGATCTCGCTCTGTTGATCACCGTTGGTCTTTGAGCTTCTTGGTGATGAAATCTCAAAAGCTGCTCTTGGCGGTTCGTTAAGATCGGATAATATGCAAGGACCTTTGAATCTGCTATTGTCGTGCTCATGGTTATTAGCCAGAACCTAAAATTTTAGCACAACTTTATTATAACTAGCCACAGCTTTGTCTTAACGGATATATATTATTACTAAAAAACAGGAGGAGTTTGAAAAAAAAAAAGAGGAGTTTGAACAAAAAGGACTTTGAGATTTGTGTGACAGCATACCATGTTTGGTCCGGTCGAAGGAGAACAAGAGGATGAGGAAGATGAAGAAGCCTCCTTGCTCTGATTGGACACACCGTGAATAGAAGATAACGACGACGGATCATGATGATCCACAGCTAAAAGAGATGTAATTGTCGTCCCAAACAATTTTATCTCCGTATCTTTAGATTTCGACAT
CDS Sequence
- >Bo6g109100
ATGTCGAAATCTAAAGATACGGAGATAAAATTGTTTGGGACGACAATTACATCTCTTTTAGCTGTGGATCATCATGATCCGTCGTCGTTATCTTCTATTCACGGTGTGTCCAATCAGAGCAAGGAGGCTTCTTCATCTTCCTCATCCTCTTGTTCTCCTTCGACCGGACCAAACATGGTTCTGGCTAATAACCATGAGCACGACAATAGCAGATTCAAAGGTCCTTGCATATTATCCGATCTTAACGAACCGCCAAGAGCAGCTTTTGAGATTTCATCACCAAGAAGCTCAAAGACCAACGGTGATCAACAGAGCGAGATCACAACAACAACAACAAGTACATCAGAAGATAAACCAACTACTCTCAAGAAACCGGACAAGCTTCTACCGTGTCCGAGATGCGAAAGCGCGCACACCAAGTTCTGTTACTACAACAACTACAACGTGAGCCAGCCGCGTCACTTCTGCAGGAACTGTCAGAGGTACTGGACAGCTGGTGGATCCATGAGAAACGTCCCCGTTGGCTCAGGCCGCCGCAAGAACAGAGGGTGGGCTTCTTCAAACCATTACTTGCAGGTCACGTCTGATGATTATGAGAACAACAATAACTCGGGAACGATCCTCAGTTTCGGTTCTTCAGAGTCTTCCGTCATAGAGACTGGTAAGCATCAAGAAAACAAAACACACCAAGGGTTTCTTGCTTCGCAAGTAATGTTACCTAATAATACTTCTCCTTGGCCTTACCAATGGAGTCCAACGGGTCGTAATACTAGTTTCTACCCTATCCCTTTCTATTGGGGCTGCACGGTTCCTATGTGGCCTACCTCAGAGGCTTCACCATGTTTAGGGAAACGATCAAGGGATGAAACTGAAGTAGAAACCAAAAATACCACTCTTAGAACTAGTGAAGCTACTAAGAACGTGGTGTGGCCTAAGCTACCGACAAAGCCTGAGAAGAAAATGGAAGGAGGATTAAGTTTGTTCAATGGATTTGAAACAAAGGGTAGCAACAGAAGAAGCTTGGTCCCTGAAACGTCTATCAATCTACAAGCAAACCCTGCAGCGATGTCTAGATCTATGAACTTCAGGGAAAGCATGCAACAATAA
Protein Sequence
- >Bo6g109100
MSKSKDTEIKLFGTTITSLLAVDHHDPSSLSSIHGVSNQSKEASSSSSSSCSPSTGPNMVLANNHEHDNSRFKGPCILSDLNEPPRAAFEISSPRSSKTNGDQQSEITTTTTSTSEDKPTTLKKPDKLLPCPRCESAHTKFCYYNNYNVSQPRHFCRNCQRYWTAGGSMRNVPVGSGRRKNRGWASSNHYLQVTSDDYENNNNSGTILSFGSSESSVIETGKHQENKTHQGFLASQVMLPNNTSPWPYQWSPTGRNTSFYPIPFYWGCTVPMWPTSEASPCLGKRSRDETEVETKNTTLRTSEATKNVVWPKLPTKPEKKMEGGLSLFNGFETKGSNRRSLVPETSINLQANPAAMSRSMNFRESMQQ