Information report for Bra003994
Gene Details
Functional Annotation
- CDF5 is a circadian regulated transcript that is antiphasic with respect to its natural antisense transcript (NAT) FLORE (AT1G69572).CDF5 transcript accumulation delays flowering. CDF5 links circadian oscillation and photoperiodism.
Homologous
- Arabidopsis thaliana: AT1G69570.1
- Brassica napus: GSBRNA2T00124299001, GSBRNA2T00067590001, BnaC06G0306600ZS, GSBRNA2T00112897001, BnaC06G0360900ZS, GSBRNA2T00101928001, BnaA07G0310700ZS, GSBRNA2T00030041001
- Brassica oleracea: XP_013588706.1, Bo6g095390, XP_013588756.1, Bo6g109100
- Raphanus raphanistrum: RrC6041_p2
Gene Resources
- Pfam: PF02701
- UniProt: A0A078F307
- EMBL: HG994361 , LK031978
- AlphaFoldDB: A0A078F307
- OMA: AMNFRES
- InterPro: IPR003851 , IPR045174
- PANTHER: PTHR31089 , PTHR31089:SF78
- PROSITE: PS01361 , PS50884
- STRING: 3708.A0A078F307
Sequences
gDNA Sequence
- >Bra003994
TGTCTAAATCTAGAGATATAAAGTTGTTTGGTACGACAATTACATCTCTTTCAGCTGTGAATCATTATGATCCGTCGCCGTTGTCCGCAGCTCATGGTGGTTCCGACCAGAGCAAGGAAGCTTCTTCGTCTTCCTCGTCTTCTTGTTCTCCCTCTATCAGACCAGACAGGGTATGTCACGCGAGTTCTTGTCTTTTTTTTTTCTCTCTTTTGTTTTGTGTTAAATAACTTATAACGAACAGAGATTTGAATCAAGTTTTGTTAGGTCAACTTGAAAAGTTTTATAGGGAAAATTTAGAGATCATAGGATCAACTGACACTTGGAGCGGATTAATTATTACACGTAGTTGTTTCGGACATAGGAACCAGAACTGGTTTTGGGCATAGAACCAAGTGAAATATTCGTTAAGGCAGCTAAAATATAAACATAAGCAACCAATTTATTTAAAAAAATTTACCCAAATCCTTGCTATTGTTTATAGTCTTCAAAGTATTAGGGTTGGATTAGGAGATTACTGATTTCTCGGCTCAGAACTTCTTGATTATTAAAAATATATACTGAGCCTGGCTAACCTGGGGTAGCAAATTTAACGGTCACCATTTTTACCATGCATCCATTACTAATAAAAGACAAGAATTGGTTATTTTTTTGACTTTTTTATAACCCTAACACATGGCTATTGGCTATTGCTAAACCCTAATCAAAATTCTGCAAAATTTTCAGGTTCTCGCTGATAAAAACGAGCAAGAAAGTAGCAGATTCAAGGATCCTTACACATTATCCCATCTTAACGAACCGCCAAAAGCAGCATCTGAGATTTTATCACCATTAAGCTCCAAGACTAACACCGATCAACAGAGCGAGCTCACAACAACAAGTACATCAGCAGCTGATAAACCAACAACTCTCAAGAAACCGGACAAGATACTTCCATGTCCGAGGTGCGAAAGCGCAAACACCAAATTCTGTTACTACAACAACTACAACGTGAGCCAGCCACGTTACTTCTGCCGGAACTGTCAGAGGTACTGGACTGCTGGTGGATCCATGAGAAACGTCCCCGTTGGTTCTGGCCGCCGCAAGAACAAAGGATGGCCTTCTTCGAACCATTACTTGCATGTCACCTCTGAGGACTATGAGAATAACAACAACTTGGGAACGATCCTCAGTTTCGGTTCTTCAGAATCCTCGGTTACAGAGACTGGTAAGCATCAGCCAGGAGATACAAAGATAACCGCTGATTCAGCTTCTCAACAACACCAAACAGGTCAAGGCTTTCTTCCTCCGCAAGTAATGTTTCCGAATAATTCTTCCCCTTGGCCTTACCAATGGAGTCCAGCGGGTCCTAATGCTAATTTCTACCCTATACCTTTCTACTGGGGCTGCACGGTTCCTGTATGGCCTACCTCAGAGACTCCAACATGCTTAGGGAAACGATCAAGGGATCAAACACAAGGAGGAGGAATGAGAGATGCTTCTATTACAACACGAGAAAGATTGGTTTCAGAAACTCTTAGCATTAGCGAAGTTACTAAGACCGCGGTGTGGTCGCCAAAGCCCGAGAGAAAAACAGAAGGATTCAGTCTGTTCAATGGATTTGAAACAAAGGGTAGTAACAGAAGAAGCTTCGTTCCCGAAACGTCTATCAATCTACAAGCAAACCCTGCAGCGATGTCTAGATCAATGAACTTCAGGGAGAACATGCAACAATAA
CDS Sequence
- >Bra003994
ATGTCTAAATCTAGAGATATAAAGTTGTTTGGTACGACAATTACATCTCTTTCAGCTGTGAATCATTATGATCCGTCGCCGTTGTCCGCAGCTCATGGTGGTTCCGACCAGAGCAAGGAAGCTTCTTCGTCTTCCTCGTCTTCTTGTTCTCCCTCTATCAGACCAGACAGGGTTCTCGCTGATAAAAACGAGCAAGAAAGTAGCAGATTCAAGGATCCTTACACATTATCCCATCTTAACGAACCGCCAAAAGCAGCATCTGAGATTTTATCACCATTAAGCTCCAAGACTAACACCGATCAACAGAGCGAGCTCACAACAACAAGTACATCAGCAGCTGATAAACCAACAACTCTCAAGAAACCGGACAAGATACTTCCATGTCCGAGGTGCGAAAGCGCAAACACCAAATTCTGTTACTACAACAACTACAACGTGAGCCAGCCACGTTACTTCTGCCGGAACTGTCAGAGGTACTGGACTGCTGGTGGATCCATGAGAAACGTCCCCGTTGGTTCTGGCCGCCGCAAGAACAAAGGATGGCCTTCTTCGAACCATTACTTGCATGTCACCTCTGAGGACTATGAGAATAACAACAACTTGGGAACGATCCTCAGTTTCGGTTCTTCAGAATCCTCGGTTACAGAGACTGGTAAGCATCAGCCAGGAGATACAAAGATAACCGCTGATTCAGCTTCTCAACAACACCAAACAGGTCAAGGCTTTCTTCCTCCGCAAGTAATGTTTCCGAATAATTCTTCCCCTTGGCCTTACCAATGGAGTCCAGCGGGTCCTAATGCTAATTTCTACCCTATACCTTTCTACTGGGGCTGCACGGTTCCTGTATGGCCTACCTCAGAGACTCCAACATGCTTAGGGAAACGATCAAGGGATCAAACACAAGGAGGAGGAATGAGAGATGCTTCTATTACAACACGAGAAAGATTGGTTTCAGAAACTCTTAGCATTAGCGAAGTTACTAAGACCGCGGTGTGGTCGCCAAAGCCCGAGAGAAAAACAGAAGGATTCAGTCTGTTCAATGGATTTGAAACAAAGGGTAGTAACAGAAGAAGCTTCGTTCCCGAAACGTCTATCAATCTACAAGCAAACCCTGCAGCGATGTCTAGATCAATGAACTTCAGGGAGAACATGCAACAATAA
Protein Sequence
- >Bra003994
MSKSRDIKLFGTTITSLSAVNHYDPSPLSAAHGGSDQSKEASSSSSSSCSPSIRPDRVLADKNEQESSRFKDPYTLSHLNEPPKAASEILSPLSSKTNTDQQSELTTTSTSAADKPTTLKKPDKILPCPRCESANTKFCYYNNYNVSQPRYFCRNCQRYWTAGGSMRNVPVGSGRRKNKGWPSSNHYLHVTSEDYENNNNLGTILSFGSSESSVTETGKHQPGDTKITADSASQQHQTGQGFLPPQVMFPNNSSPWPYQWSPAGPNANFYPIPFYWGCTVPVWPTSETPTCLGKRSRDQTQGGGMRDASITTRERLVSETLSISEVTKTAVWSPKPERKTEGFSLFNGFETKGSNRRSFVPETSINLQANPAAMSRSMNFRENMQQ