Information report for Bo4g027160
Gene Details
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Functional Annotation
- Encodes RNA polymerase II transcript elongation factor TFIIS. Complements yeast TFIIS mutation. Mutant plants display essentially normal development, but they flower slightly earlier than the wild type and show clearly reduced seed dormancy.
Homologous
- Arabidopsis thaliana: AT2G38560
- Brassica napus: BnaC04G0079900ZS, BnaA05G0070500ZS, BnaA03G0185600ZS, BnaC03G0217700ZS
- Brassica rapa: Bra005095, Bra000069
- Gossypium hirsutum: Gohir.A09G213664, Gohir.D09G215100, Gohir.D10G112700, Gohir.A10G153500
- Manihot esculenta: MANES_08G170400, MANES_09G123400
- Populus trichocarpa: POPTR_016G138100v3, POPTR_006G109300v3
- Vitis vinifera: VIT_08s0058g01410
Gene Resources
- Pfam: PF08711 PF01096 PF07500
- UniProt: A0A0D3BQT8
- RefSeq: XP_013631211.1
- AlphaFoldDB: A0A0D3BQT8
- KEGG: boe:106336816
- OMA: FQKTDMK
- InterPro: IPR001222 , IPR003617 , IPR003618 , IPR006289 , IPR017923 , IPR035100 , IPR035441 , IPR036575
- PANTHER: PTHR11477 , PTHR11477:SF39
- SUPFAM: SSF46942 , SSF47676 , SSF57783
- PROSITE: PS00466 , PS51133 , PS51319 , PS51321
- Gene3D: 1.10.472.30 , 1.20.930.10 , 2.20.25.10
- OrthoDB: A0A0D3BQT8
- CDD: cd00183 , cd13749
- eggNOG: KOG1105
- STRING: 109376.A0A0D3BQT8
- HOGENOM: CLU_037637_0_0_1
Sequences
gDNA Sequence
- >Bo4g027160
CAACAGAACTTCCAGTGATTGTCGCAGTTAACACACGTAACATAAGTCGTCATCGGCTCATCAGCACTCCTCGTCTGCATCTGATAGTAAGTACATTTACGCTGCCCACACCTCCCACACTTGAACTGATCAGTACTCGCTTTCGGCGCCTGACCACGCTCACAATCAAACAGAAACTTCTCCTTGATCTGATTAGTCTCCTGTTTCCTCTTGTCGCTTGCCATCTCTTCGCCAGACAATGTAATAAGTTTCTCCGGCGACACCTCCCCTGTGAGAACCCTCCTCCTCAGATCCGGATTGTTACTGTCCCTCAGGTTGAACATTATAGATCTGTACTTCACCTTCTGAGCTCCCGTTGACCGTCCCAGCTTCTCAAACATGTGAGACTCCACAGAGACAGCGACGCGGATTGGATCACATCCAACAACTCTCGCTCTATCATAGTCATCGGATTCGTCATGGACCTTGGACATTGCGTCCACAAGCAGCTCACGGATTTTGTCACGCACAGGGTCGTTGCATTTCACCATCGAAGTCAGCTTTGGTGCACCATTATTTGATGGTGCCTTAGCTGGTGCTTTCATACTAGATTGATTCTCCTTTGAGGCCCCAGCATCCTTCCTCTCTACCTTCACACCGTTGTCTCGTTCCTTCCTCTCTTCTACCTTGATGCTCTTAGCTGAATCACCTCTCTGAAGCTTCTGCACTTTCACAGGCGTTGGATTTGGAGTCTTGTCAACATCTTTCCTTTCCAGCTTAGACTTGGACGTCTCTTCAATGACGAGTTTCTTCCATATCTCAAGAAGGTCGGTAGCTACGGTTTTGATTTCATCAATGGGATGTTTTGAAAGAGACCTCAGCTTCTTCCCTACCTGGGAGCAATAACGTGCTATTAGAATAATTTTTAAAGACTTATTCTTGGGTTCACCCTCTAGATTCACAGACCAATAGGATTGTGTTATTTCATATTTGATATTTTTAAAAAAGAAAACAAAATATTGTCAAATTATATTATTTTTTTAAAACTAATAGGTAAAAAAAAATAAATAAAAAATAGTAGTAATTACAAAAAAAAAAATTTAACGTCGTCAGCAAAACATTAAACCTTAAATCCTAATCCCTAAACCCTAAATCCTAAACCCTAAATCCTAAACCCTAAACCCTAAACCCTAAACCCTAAACCCTTGAGTGTTTTAGTGTTTAGTGATTTTGATTTAGAGTTTAAGATTTATCCTAGAGTTTAGGGTTTACCAAGGGTTTAGGGTTTACCCAAGGGTTTAGGGTTTAGGATTTAGTGTGTTGCTGACGACGTTAAAAATATTTTTTTTAATTCTTTTTTCTATAACTAGTTTTTTTTTGACTTTTTATTTTAAAAGTATAATATAACTTGACAATATTTTGTTTCCTTTTGTAAAAGATATCGAATTTGAAATAATGAAATCTTATTGGTTGGTGAACCTAGGTTCACGAATAACTCATTTTTAAATCTCTCTAATATTGTTATGAGTATAATGAGATTAGAATAAAGATAATTCAGTTTAAATCTCTTTAATATTGTTTGAGCATAATCAACAATAAAGAGGTGTTATTGGTTTATATATTTTGATTGATTTAGAAATCCATATAGTATTTATAAATCCAAGTAAAATATGCAAATCCGAAGGTTTTTCCTCGGATTTGAGTCTTTGTATTTTTAACTAAAAAATTCAAACAAATCCATTCAAATCCATTATAAAATCAAATATATTAGTAAATATTGAATAACACTTGATTTGATACAGAATTTATGAATCATTAAACCAATAACACATGATTTTAATACAAATTTGAAAATCATGAAACCAATAACACTAGATTTAGTTCGGATTTTCAAATCCATTAAAATACAACAACCAATAACCGCTTAATAAAGTTTTAATCTTTTCAATTTGAAAAGTTTCAGATGAAATTAATGATCCTTAACACAAGTCAATGCTATGAGATTAGGCAAGCAACAGATTCAGCGAACCCTCTGATTCAAACAGCGTATCAGGCAAAAAGATCGAGACTTTGTAGATTAAAGAGATGAATTAGAGACGAACCTGAGTCGCGACGAGCATGTCGTATGTGATGGGAAACTTCTTGAGCTGTTTAAGGGCGTCGAGAGATCGAGAAACCTCCTGACCTGTGGAGGTTACGCCGTCGATCGCCGCCGCATCGGCTGCCTTCTTCGCCGCCTCGAACAATTCGATCAATTCGCTTTCCAT
CDS Sequence
- >Bo4g027160
ATGGAAAGCGAATTGATCGAATTGTTCGAGGCGGCGAAGAAGGCAGCCGATGCGGCGGCGATCGACGGCGTAACCTCCACAGGTCAGGAGGTTTCTCGATCTCTCGACGCCCTTAAACAGCTCAAGAAGTTTCCCATCACATACGACATGCTCGTCGCGACTCAGGTAGGGAAGAAGCTGAGGTCTCTTTCAAAACATCCCATTGATGAAATCAAAACCGTAGCTACCGACCTTCTTGAGATATGGAAGAAACTCGTCATTGAAGAGACGTCCAAGTCTAAGCTGGAAAGGAAAGATGTTGACAAGACTCCAAATCCAACGCCTGTGAAAGTGCAGAAGCTTCAGAGAGGTGATTCAGCTAAGAGCATCAAGGTAGAAGAGAGGAAGGAACGAGACAACGGTGTGAAGGTAGAGAGGAAGGATGCTGGGGCCTCAAAGGAGAATCAATCTAGTATGAAAGCACCAGCTAAGGCACCATCAAATAATGGTGCACCAAAGCTGACTTCGATGGTGAAATGCAACGACCCTGTGCGTGACAAAATCCGTGAGCTGCTTGTGGACGCAATGTCCAAGGTCCATGACGAATCCGATGACTATGATAGAGCGAGAGTTGTTGGATGTGATCCAATCCGCGTCGCTGTCTCTGTGGAGTCTCACATGTTTGAGAAGCTGGGACGGTCAACGGGAGCTCAGAAGGTGAAGTACAGATCTATAATGTTCAACCTGAGGGACAGTAACAATCCGGATCTGAGGAGGAGGGTTCTCACAGGGGAGGTGTCGCCGGAGAAACTTATTACATTGTCTGGCGAAGAGATGGCAAGCGACAAGAGGAAACAGGAGACTAATCAGATCAAGGAGAAGTTTCTGTTTGATTGTGAGCGTGGTCAGGCGCCGAAAGCGAGTACTGATCAGTTCAAGTGTGGGAGGTGTGGGCAGCGTAAATGTACTTACTATCAGATGCAGACGAGGAGTGCTGATGAGCCGATGACGACTTATGTTACGTGTGTTAACTGCGACAATCACTGGAAGTTCTGTTGA
Protein Sequence
- >Bo4g027160
MESELIELFEAAKKAADAAAIDGVTSTGQEVSRSLDALKQLKKFPITYDMLVATQVGKKLRSLSKHPIDEIKTVATDLLEIWKKLVIEETSKSKLERKDVDKTPNPTPVKVQKLQRGDSAKSIKVEERKERDNGVKVERKDAGASKENQSSMKAPAKAPSNNGAPKLTSMVKCNDPVRDKIRELLVDAMSKVHDESDDYDRARVVGCDPIRVAVSVESHMFEKLGRSTGAQKVKYRSIMFNLRDSNNPDLRRRVLTGEVSPEKLITLSGEEMASDKRKQETNQIKEKFLFDCERGQAPKASTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVNCDNHWKFC