Gene Details:

  • Gene ID: A03p000960.1_BraROA
  • Suggest Gene Name: LHY/CCA1-LIKE 1, REVEILLE 4
  • Description: putative flowering gene
  • Species: Brassica rapa ro18
  • Source: Putative flowering gene from PlantCFG

Protein Features:

Functional Descriptions:

  • CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.

Homologous

Sequences:

gDNA Sequence
  • >A03p000960.1_BraROA
    TGACCTCGTCTCTTTCAAGCAATCCGGTGGTTTCTGAAGAAAGACCGGCGGAAACGTCCACAGATCTTACAGAGACGACGACGGAAGCTCCGGAGAAGAAGGTGAGGAAAGCTTACACGATCTCCAAGTCCAGACAGAGTTGGACTGAAGGAGAGCACGATAAGTTTCTCGAAGCTCTTCAACTGTAATATAGCTGAAAGTTGCTCCATTTTCTTCTTAGTATGTGACTTAATAATACACTTTGTTGCTGATACTGTTGTCTTGCGTCCTTAGGTTTGATCGTGACTGGAAAAAGATTGAAGATTTTGTCGGTTCAAAGACAGTTATTCAGGTTTGAGATTAACTGCTTTCGAGTTTTGGTTTATATATTTATACATTGCCACTCACTCAATCTTACTCTGATTTGCTACAGATCAGGAGCCATGCCCAAAAGTACTTTCTGAAGGTAGAGAAAAACGGGACCTTTGCGCACGTGCCACCTCCTAGGCCTAAGCGCAAAGCTGCTCATCCATATCCTCAAAAGGCAGCTAAGAGTGGTTAGTTTTATTACAAGAAGAGTTTACTTTGGGTGGATAGATGAATTTAACTTTGTTCAATCTAAACTTGTAGCTCAAATGTCGCTTCACGTTTCCATGTCATTTCCTCCAGAAATAAGTAACTTGTCAGGATATGGTTCATGGGATGATGATACCTCTGCATTGCTTAGCATAGCCGTAAGCGAGGTTATACTACCAAAAGATGAGATTGACACTCTTTGTGGAGGAGAAGGCCTGCATTCTCATCTCTACTCAATTTTTTTTTTAAATTTGGTTTGGCAGTTGAGTTACTCCATGTGAAGAAGGTTCATATGCTAAATGCAGCTTGAAAATGTTATTGGTTTCAGTTGTTATTGAATTGAATGGCTCAACAAGTGCGGTTAGTCCTTCAGCATCTGGTATAGGAAGCTCAAGCAGAACTCTACCAGATTCAGAGGGTTTAACACCGGTGAATCAAGCTCCCTCAATGCAGGGTAATTATTTCTGAGTTTTTATTTTATGGTGGAGTTCACTGTTCTAATGGTTGTTTTTTTTCGGCAGGTCTTCCTGATTTTGCTGAAGTTTATAACTTCATTGGGAGTGTGTTCGATCCTGACAGCAAAGGCCGCATGAAAAAGTTAAAAGAGATGGATCCTATTAATTTCGAAACTGTGAGTTACAACATGCTTGTTTGCCTTTAGGTTATATGATGTGTGTGACTGTGATACATCCATCATTTAGGCGACTTTTATCTTTATAGTAAGCCTGTCACATAGCTGAATCTAATAGTAGAGGCTGCATTCTGTAGATTTTGTTTCATAAACAAAGTTTGCTTGGTAGTATGGTACCATGATTCTGTGGAGATGTTGAACAACCTTGGTTCAGTATTTTTTTTTTTTTTTTTTAAGTTTCCTGGTGCATTTACGTAGCTGCCAGTTGATTGTTCTTGATATAGTACCCTTGACCAATCGCTGTATGCATGGCAGGTACTGCTATTGATGAGAAACCTCACAGTGAATATGTCAAATCCTGACTTCGAACCTTCTGTAAGTGTTAAAACTTATCATAACTTCCATGCTTGTTAGAAATAAATCTATTTCGTTCTTGGTGTGTTACTTCCTTAAACGTTCCAATGATTAGAGTGAAGATTGTTGTACTTTTTTGAGATCTATATCACACACACTGAAACATATGTAATCTAACCTTGGTATAGTCTGATGCTGCAGAGGAAGGTTCAGAACACTTAAGCTCTTAGCTCTAGTGTGAGATCGCTGGCCAAGAACGAAACAAGTGAATTATCTTTCTTGATGGACTTCTTGCTCACAACAACTGTGTATATCAGCTATAAAGTAAGTGTGGTTTTATACCTCATCCTTCCCACATCAATGTAAACCAGACCTTACCGCATATATAAGCTTTAATCTCTCAGCTGAGCTGCTATAAGGAGTTACCATTGGCTATATGATCTCTCTGTGCATTTGGTGTATTGCGTCACATGGTAGATAAAATTTATAGTGTGTGTAGTAGAAAAATGGGCACCTTGTATTTTCCTATTTGATATATATATTTATTTGTTCATGCGTTTTGTAATTTGTAGTTTTCTTTCCCACTTTAGACGATTGGTTATTTCTGGTCATATATTGATACCAAAGACAATGTCTCAGCTAGAAAATGCAACTAAACCCATAAAAGAGACACATGAGTCAGTTGTATCCCGTTTGTATCAGGCATTAGCTTCCAAGTCATGTCTCAAGCCTTTCTCCTTAACGATAACCGGGAAATTGAACTCAACCCTTTCTCATTAACGATAACCGGGAATCTAGATCGTATTGGTTTGGTTCAAGAGAGTTTTTAAAACCCTCTGGCTCGCTCTGAAGGTTTAGGAAGTGGATTATTATTATTATTCTTATCCAGTGATCCACCGTCGTCGATCTATAAACCGAAAGGAGAAGTCCACTGTCTCTCCGGCGGCGAGGATGCTACAGCATCAGATCGCTCAATCTCCGGCGAGATTAGGCTTAACAACAGGCCCTGGCTCTCCCTCCGTACAAAATCTCACGCCTTCTCGCCATGGCCATCCAACCTCTTCCTCATCCTCCCAATCTCACCACCAACAGATCCTGACGCACCTTCGAAGCCGTTACGGAGCTTCAAGAGATCCTCGATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAGATCCTCGATCTCCAAGACGCAAAGCAGAAGGTCGCGCGTGAGGTCAAATCCAAAGATTCGTCTCTTCTCTCCTTCGCCAACAAACTCAAGGAAGCAGAACGCGTTCTCGCTCTTCGTCCTCTGTTACCACCACAGTTTCTTCTCAGCTCAAGCTGAAGGACATCTTAGCCTACGCTCACAAGATTAGCTACACAACGTTTGCTCCTCCGGAGTTCGGTGCAGGGCAAGCACCTCTCCGCGGCGCGTTGCCGCCAGCGTAGCTTCTCAGCTCTACACCTTCGCTGATCTTGACATCGGTCTACCCAAAACAGTTGAAAACATTGAGAAGAAGGTTGAAGCACTCATCGAGCCGCCGCCACCAGAGAGTATGATGAACCTTTCTGCGATTCAGAACCTGCTTCCACCGAATATCGAGGTTCCATCAGGATGGAAACCAGGAATGCCAGTGGAGTTGCCTAAAGATTGGCCAATGCCACCTCCTGGATGGAAACCAGGAGACCCTGTGGTGATACCGCCTGCACCTAGAGCCCAGGAGCAGCAACAGATGCTGCGGCCTCCTCCTGGACTTCACAGACCGCCTGACGTCATACAGGTCCGAGCTGTTCAGCTCGACATTTTGGAGAGTGATGATAGCAGTGATTACAGCAGCGATGATGCCAGCTCAGATGACGGGGAGTAA
CDS Sequence
  • >A03p000960.1_BraROA
    ATGACCTCGTCTCTTTCAAGCAATCCGGTGGTTTCTGAAGAAAGACCGGCGGAAACGTCCACAGATCTTACAGAGACGACGACGGAAGCTCCGGAGAAGAAGGTGAGGAAAGCTTACACGATCTCCAAGTCCAGACAGAGTTGGACTGAAGGAGAGCACGATAAGTTTCTCGAAGCTCTTCAACTGTTTGATCGTGACTGGAAAAAGATTGAAGATTTTGTCGGTTCAAAGACAGTTATTCAGATCAGGAGCCATGCCCAAAAGTACTTTCTGAAGGTAGAGAAAAACGGGACCTTTGCGCACGTGCCACCTCCTAGGCCTAAGCGCAAAGCTGCTCATCCATATCCTCAAAAGGCAGCTAAGAGTGCTCAAATGTCGCTTCACGTTTCCATGTCATTTCCTCCAGAAATAAGTAACTTGTCAGGATATGGTTCATGGGATGATGATACCTCTGCATTGCTTAGCATAGCCGTAAGCGAGGTTATACTACCAAAAGATGAGATTGACACTCTTTTTGTTATTGAATTGAATGGCTCAACAAGTGCGGTTAGTCCTTCAGCATCTGGTATAGGAAGCTCAAGCAGAACTCTACCAGATTCAGAGGGTTTAACACCGGTGAATCAAGCTCCCTCAATGCAGGGTCTTCCTGATTTTGCTGAAGTTTATAACTTCATTGGGAGTGTGTTCGATCCTGACAGCAAAGGCCGCATGAAAAAGTTAAAAGAGATGGATCCTATTAATTTCGAAACTGTACTGCTATTGATGAGAAACCTCACAGTGAATATGTCAAATCCTGACTTCGAACCTTCTTCTGATGCTGCAGAGGAAGGCATTAGCTTCCAAGTCATGTCTCAAGCCTTTCTCCTTAACGATAACCGGGAAATTGAACTCAACCCTTTCTCATTAACGATAACCGGGAATCTAGATCGTATTGTGATCCACCGTCGTCGATCTATAAACCGAAAGGAGAAGTCCACTGTCTCTCCGGCGGCGAGGATGCTACAGCATCAGATCGCTCAATCTCCGGCGAGATTAGGCTTAACAACAGGCCCTGGCTCTCCCTCCGTACAAAATCTCACGCCTTCTCGCCATGGCCATCCAACCTCTTCCTCATCCTCCCAATCTCACCACCAACAGATCCTGACGCACCTTCGAAGCCGTTACGGAGCTTCAAGAGATCCTCGATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAGATCCTCGATCTCCAAGACGCAAAGCAGAAGGTCGCGCGTGAGGTCAAATCCAAAGATTCGTCTCTTCTCTCCTTCGCCAACAAACTCAAGGAAGCAGAACGCGTTCTCGCTCTTCGTCCTCTGGCAAGCACCTCTCCGCGGCGCGTTGCCGCCAGCGTAGCTTCTCAGCTCTACACCTTCGCTGATCTTGACATCGGTCTACCCAAAACAGTTGAAAACATTGAGAAGAAGGTTGAAGCACTCATCGAGCCGCCGCCACCAGAGAGTATGATGAACCTTTCTGCGATTCAGAACCTGCTTCCACCGAATATCGAGGTTCCATCAGGATGGAAACCAGGAATGCCAGTGGAGTTGCCTAAAGATTGGCCAATGCCACCTCCTGGATGGAAACCAGGAGACCCTGTGGTGATACCGCCTGCACCTAGAGCCCAGGAGCAGCAACAGATGCTGCGGCCTCCTCCTGGACTTCACAGACCGCCTGACGTCATACAGGTCCGAGCTGTTCAGCTCGACATTTTGGAGAGTGATGATAGCAGTGATTACAGCAGCGATGATGCCAGCTCAGATGACGGGGAGTAA
Protein Sequence
  • >A03p000960.1_BraROA
    MTSSLSSNPVVSEERPAETSTDLTETTTEAPEKKVRKAYTISKSRQSWTEGEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVEKNGTFAHVPPPRPKRKAAHPYPQKAAKSAQMSLHVSMSFPPEISNLSGYGSWDDDTSALLSIAVSEVILPKDEIDTLFVIELNGSTSAVSPSASGIGSSSRTLPDSEGLTPVNQAPSMQGLPDFAEVYNFIGSVFDPDSKGRMKKLKEMDPINFETVLLLMRNLTVNMSNPDFEPSSDAAEEGISFQVMSQAFLLNDNREIELNPFSLTITGNLDRIVIHRRRSINRKEKSTVSPAARMLQHQIAQSPARLGLTTGPGSPSVQNLTPSRHGHPTSSSSSQSHHQQILTHLRSRYGASRDPRSQKKKKKKKKRKEILDLQDAKQKVAREVKSKDSSLLSFANKLKEAERVLALRPLASTSPRRVAASVASQLYTFADLDIGLPKTVENIEKKVEALIEPPPPESMMNLSAIQNLLPPNIEVPSGWKPGMPVELPKDWPMPPPGWKPGDPVVIPPAPRAQEQQQMLRPPPGLHRPPDVIQVRAVQLDILESDDSSDYSSDDASSDDGE