Gene Details:
- MSU gene ID: LOC_Os01g47730
- RAPdb gene ID: Os01g0667600
- Gene Symbol: OsRab11C1
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Overexpression of OsRab11C1 significantly reduced CTB, while gene knockout elevated CTB as well as cold tolerance at the seedling stage, suggesting that OsRab11C1 negatively regulates rice cold tolerance.
- Molecular analysis revealed that OsRab11C1 modulates cold tolerance by suppressing the abscisic acid signalling pathway and proline biosynthesis.
- Using RDP II and GWAS, we identified four qCTBs that are involved in CTB and determined the function of the candidate gene OsRab11C1 in cold tolerance.
- Our results demonstrate that OsRab11C1 is a negative regulator of cold tolerance and knocking out of the gene by genome-editing may provide enhanced cold tolerance in rice.
Function-related keywords:
- seedling , tolerance , cold-tolerance , abscisic-acid , cold
Literature:
- Association Mapping and Functional Analysis of Rice Cold Tolerance QTLs at the Bud Burst Stage . DOI: 10.1186/s12284-021-00538-0 ; PMID: 34825994
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os01g47730.1
GACGCGGGGGGCAACAACCCGCAGCTAACCGCGGCGACCTCGTCCGCACCGCGCCACGCGACCACACTCCACACGCCTTTCTTTTCCTTTTTCCCCCAAAAATCCAAAGCAACCTCGCCCGAAAAGAAGAGAGAACGCGCCGCGCCGCGCCGAGCCGCGTGGGTATAATTGAAGGGAAGCGGTGCGCTCGCTCGCTGCATCCAGCTCAACGCGCGGGGGAGGCGGAGCGAATCGGCGGATCGGTGGGTTGCGGGCTTGCACGTAGTCGAGGCTCGAGAGGAGGGGGGGATGGCGGCGGCGGCGGCGGCGGCGGGGTACAGGGCGGAGGAGGAGTACGACTACCTGTTCAAGGTGGTGCTGATCGGGGACAGCGGCGTGGGGAAGTCGAACCTGCTGTCGCGGTTCGCGCGGGACGAGTTCAGCCTGGAGACCAGGTCCACCATCGGCGTCGAGTTCGCCACCAAGACCGTCCGCGTCGACGACAGGCTCGTCAAGGCCCAGATCTGGGACACCGCCGGCCAAGAGAGGTACCGCGCCATCACGAGCGCCTACTACCGCGGCGCGGTGGGCGCGCTGGTGGTGTACGACGTGACGCGCCGCATCACGTTCGAGAACGCGGAGCGGTGGCTCAAGGAGCTCCGCGACCACACGGACGCCAACATCGTCGTCATGCTCGTGGGCAACAAGGCCGACCTGCGCCACCTCCGCGCCGTCCCCGCGGAGGACGCCAGGGCGTTCGCCGAGGCGCACGGGACCTTCTCCATGGAGACGTCGGCGCTGGAGGCCACCAACGTGGAGGGCGCCTTCACCGAGGTGCTCGCGCAGATCTACCGCGTCGTCAGCCGGAACGCGCTCGACATCGGCGACGACCCCGCCGCGCCGCCCCGGGGGCGGACCATCGACGTCAGCGCCAAGGATGACGCCGTCACCCCCGTGAACAGCTCAGGGTGCTGCTCGTCTTGACTTTGACTCGCTCAAACTCATCGTCGTCGAGCTATGCAAATTGCCACCGTTCACAGCTTTGTTTATACCGTGTGTTTTCGTCACTGCTGATTGATACTACAAACTTGAGAATTGGGATCAAAAGGTTGCATTTTGAAGACGTGTATTTGTTGATCAGAGATAGCGACATGCATTTTGGGACCGGAGAGAAATGAGAGACTAATTCAAGCTCGACAGATAATTTGCCCAAATTTTGATA
CDS Sequence
- >LOC_Os01g47730.1
ATGGCGGCGGCGGCGGCGGCGGCGGGGTACAGGGCGGAGGAGGAGTACGACTACCTGTTCAAGGTGGTGCTGATCGGGGACAGCGGCGTGGGGAAGTCGAACCTGCTGTCGCGGTTCGCGCGGGACGAGTTCAGCCTGGAGACCAGGTCCACCATCGGCGTCGAGTTCGCCACCAAGACCGTCCGCGTCGACGACAGGCTCGTCAAGGCCCAGATCTGGGACACCGCCGGCCAAGAGAGGTACCGCGCCATCACGAGCGCCTACTACCGCGGCGCGGTGGGCGCGCTGGTGGTGTACGACGTGACGCGCCGCATCACGTTCGAGAACGCGGAGCGGTGGCTCAAGGAGCTCCGCGACCACACGGACGCCAACATCGTCGTCATGCTCGTGGGCAACAAGGCCGACCTGCGCCACCTCCGCGCCGTCCCCGCGGAGGACGCCAGGGCGTTCGCCGAGGCGCACGGGACCTTCTCCATGGAGACGTCGGCGCTGGAGGCCACCAACGTGGAGGGCGCCTTCACCGAGGTGCTCGCGCAGATCTACCGCGTCGTCAGCCGGAACGCGCTCGACATCGGCGACGACCCCGCCGCGCCGCCCCGGGGGCGGACCATCGACGTCAGCGCCAAGGATGACGCCGTCACCCCCGTGAACAGCTCAGGGTGCTGCTCGTCTTGA
Protein Sequence
- >LOC_Os01g47730.1
MAAAAAAAGYRAEEEYDYLFKVVLIGDSGVGKSNLLSRFARDEFSLETRSTIGVEFATKTVRVDDRLVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDVTRRITFENAERWLKELRDHTDANIVVMLVGNKADLRHLRAVPAEDARAFAEAHGTFSMETSALEATNVEGAFTEVLAQIYRVVSRNALDIGDDPAAPPRGRTIDVSAKDDAVTPVNSSGCCSS*