Information report for AT3G12160
Gene Details
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Functional Descriptions
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- GO:0005525 — enables — GTP binding
- GO:0070382 — located in — exocytic vesicle
- GO:0005768 — is active in — endosome
- GO:0080092 — acts upstream of or within — regulation of pollen tube growth
- GO:0048868 — acts upstream of or within — pollen tube development
- GO:0009860 — acts upstream of or within — pollen tube growth
- GO:0005794 — is active in — Golgi apparatus
- GO:0003924 — enables — GTPase activity
- GO:0045177 — located in — apical part of cell
- GO:0005829 — located in — cytosol
- GO:0090404 — located in — pollen tube tip
- GO:0019900 — enables — kinase binding
- CS360297 — in vitro: bulged pollen tubes of mutant pollen with a reduced rate of growth in vitro; altered deposition of some cell wall components; in vivo, male-specific transmission defect with mutant pollen tubes displaying aberrant growth in the ovary and reduced guidance at the micropyle.
Functional Keywords
- sepal , flower , collective leaf structure , pollen , pollen
Literature and News
- Analysis of the small GTPase gene superfamily of Arabidopsis. DOI: 10.1104/pp.013052 ; PMID: 12644670
- Genome-wide profiling of stored mRNA in Arabidopsis thaliana seed germination: epigenetic and genetic regulation of transcription in seed. DOI: 10.1111/j.1365-313X.2005.02337.x ; PMID: 15703057
- Expressed sequence tag analysis of Lilium longiflorum generative cells. DOI: 10.1093/pcp/pcj040 ; PMID: 16571618
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Rho-GTPase-dependent filamentous actin dynamics coordinate vesicle targeting and exocytosis during tip growth. DOI: 10.1083/jcb.200801086 ; PMID: 18591430
- A systems model of vesicle trafficking in Arabidopsis pollen tubes. DOI: 10.1104/pp.109.148700 ; PMID: 19933386
- Arabidopsis RhoGDIs Are Critical for Cellular Homeostasis of Pollen Tubes. DOI: 10.1104/pp.15.01600 ; PMID: 26662604
- The Tip-Localized Phosphatidylserine Established by Arabidopsis ALA3 Is Crucial for Rab GTPase-Mediated Vesicle Trafficking and Pollen Tube Growth. DOI: 10.1105/tpc.19.00844 ; PMID: 32817253
- The phospholipid flippase ALA3 regulates pollen tube growth and guidance in Arabidopsis. DOI: 10.1093/plcell/koac208 ; PMID: 35861414
Gene Resources
- UniProt: A0A178V6M2
- EMBL: CACRSJ010000106, CACSHJ010000089, LR881468
- AlphaFoldDB: A0A178V6M2
- EnsemblPlants: AT3G12160.1
- Gramene: AT3G12160.1
- KEGG: ath:AT3G12160
- Orthologous matrix: FDHIERW
- ExpressionAtlas: AT3G12160
- InterPro: IPR001806, IPR005225, IPR027417
- PANTHER: PTHR47979
- SUPFAM: SSF52540
- PROSITE: PS51419, PS51420, PS51421
- Gene3D: 3.40.50.300
- OrthoDB: A0A178V6M2
- SWISS-MODEL: A0A178V6M2
- Conserved Domain Database: cd01868
Homologs
- Actinidia chinensis Achn273391
- Fragaria vesca mrna29786.1-v1.0-hybrid
- Gossypium hirsutum Gh_A09G1177
- Lupinus albus Lalb_Chr04g0259661
- Malus domestica MDP0000180376
- Oryza sativa RGP1, OsRab11, OsRab11C1, OsPRA2
- Raphanus raphanistrum RrC3821_p1
- Sesamum indicum SIN_1023555
- Solanum lycopersicum Solyc04g012180.3
Sequences
cDNA Sequence
- >AT3G12160.1
GTTAATCCTCTCTTTCTCTCAATCTCTGAATAATTTTTCGCTTTCTCTGCCTAACCACCATTCATTGTGATCTGAGTTTCTGTGTTCGTCTGATGGTAGATTCGACTGTTTCACGCGTGCAATACGAATCCGAGACTCTTCGCCTTTCGTATTCGTGATCTGGAGATTTGTGTATATTCATTCTCCTTTGTTGTTGTGTTTTTAAATAATAATAATAAGAAGAAGAAGAGAGATGTCTAATTTGTATGGAGATTATAACCAAAAGATCGATTACGTCTTCAAAGTCGTGTTGATCGGTGATTCTGCCGTTGGCAAAACTCAGCTTCTTGCTCGGTTCGCTAGGAATGAGTTTAGCGTCGATTCTAAAGCCACCATTGGTGTTGAATTCCAGACTAAAACGCTCGTCATTGATAACAAAACCGTCAAAGCTCAGATTTGGGATACTGCTGGCCAAGAAAGATATAGGGCGGTGACAAGTGCATACTACCGTGGAGCAGTTGGGGCAATGTTGGTCTACGACATGACCAAACGTCAATCATTCGATCACATGGCTAAATGGCTGGAAGAGTTACGAGGACATGCGGACAAGAACATAGTGATTATGCTAATTGGGAACAAATGTGATCTTGGAAGCCTAAGAGCAGTGCCAACAGAAGACGCACAAGAGTTTGCACAAAGAGAAAACTTGTTTTTCATGGAAACCTCTGCTCTAGAAGCTACCAATGTTGAAACAGCATTTTTGACCATCTTAACAGAGATCTACCGAATAATCAGCAAGAAATCACTAACGGCTGATGATGATGACGCCGATGGTAATTCAAGTCTCTTGAAAGGAACTAGAATCATCATCCCGAGCGAGCAAGAGAGTGGGAAAAGAGGTGGATGTTGCGGCAAATCGTAATTCTACTAGCGAAAGAGAGAAAGATTGTATTTTTTGGTTGTTCTTGTTGTTTTTTCTTTGTCCCGCTTTATATATTTTGTTATTCGTGTTAGGCCATTTGTTCTTGAAACGAAACAATATGCCAAGGTTTACTAGAGAAAGAGTATGAGGGTGAAACAAGAAGCCCCCATTTTTTACATCACATTTTATAGAAAAAAATAACCTTTTATGAGATCGTGT
CDS Sequence
- >AT3G12160.1
ATGTCTAATTTGTATGGAGATTATAACCAAAAGATCGATTACGTCTTCAAAGTCGTGTTGATCGGTGATTCTGCCGTTGGCAAAACTCAGCTTCTTGCTCGGTTCGCTAGGAATGAGTTTAGCGTCGATTCTAAAGCCACCATTGGTGTTGAATTCCAGACTAAAACGCTCGTCATTGATAACAAAACCGTCAAAGCTCAGATTTGGGATACTGCTGGCCAAGAAAGATATAGGGCGGTGACAAGTGCATACTACCGTGGAGCAGTTGGGGCAATGTTGGTCTACGACATGACCAAACGTCAATCATTCGATCACATGGCTAAATGGCTGGAAGAGTTACGAGGACATGCGGACAAGAACATAGTGATTATGCTAATTGGGAACAAATGTGATCTTGGAAGCCTAAGAGCAGTGCCAACAGAAGACGCACAAGAGTTTGCACAAAGAGAAAACTTGTTTTTCATGGAAACCTCTGCTCTAGAAGCTACCAATGTTGAAACAGCATTTTTGACCATCTTAACAGAGATCTACCGAATAATCAGCAAGAAATCACTAACGGCTGATGATGATGACGCCGATGGTAATTCAAGTCTCTTGAAAGGAACTAGAATCATCATCCCGAGCGAGCAAGAGAGTGGGAAAAGAGGTGGATGTTGCGGCAAATCGTAA
Protein Sequence
- >AT3G12160.1
MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFARNEFSVDSKATIGVEFQTKTLVIDNKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMAKWLEELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTILTEIYRIISKKSLTADDDDADGNSSLLKGTRIIIPSEQESGKRGGCCGKS