Gene Details:
- Gene ID: Zm00001eb019170
- Gene Symbol: ZmPLA1 matl1 MATRILINEAL MTL
- Gene Name: patatin-like protein 1
- Genome: Zm-B73-REFERENCE-NAM-5.0
- Species: Zea mays
Functional Descriptions:
- The 4-bp (CGAG) insertion may cause a weak or loss-of-function allele of ZmPLA1, leading to the HI phenotype.
- ZmPLA1 (GRMZM2G471240) Mutation Causes Haploid Induction in Maize.
- A 4-bp Insertion at ZmPLA1 Encoding a Putative Phospholipase A Generates Haploid Induction in Maize.
- ZmPLA1/MTL-mediated HI may facilitate to enhance breeding efficiency not only in maize but also in other important crops.
- ZmPLA1 encodes a pollen-specific phospholipase; novel edits lead to a 6.7% haploid induction rate.
Function-related keywords:
Literature:
- A 4-bp Insertion at ZmPLA1 Encoding a Putative Phospholipase A Generates Haploid Induction in Maize. DOI: 10.1016/j.molp.2017.01.011 ; PMID: 28179149
- Striking a growth-defense balance: Stress regulators that function in maize development. DOI: 10.1111/jipb.13570 ; PMID: 37787439
Related News:
Gene Resources:
- NCBI ID: LOC103635924
- UniProt accessions: A0A1D6K4Z0 , A0A1P8YYK6 , A0A317YLS2
Sequences:
cDNA Sequence
- >Zm00001eb019170_T002
GTTCATCACTAATCACACTTATTGTGCCCTCGACGAGTATCTATAGCTAGCTCATTAATCGATTCGGGGGTGTGTTGTCGAAGGCGGCAATGGCGAGCTACTCGTCGCGGCGTCCATGCAATACCTGTAGCACGAAGGCGATGGCCGGGAGCGTGGTCGGCGAGCCCGTCGTGCTGGGGCAGAGGGTGACGGTGCTGACGGTGGACGGCGGCGGCGTCCGGGGTCTCATCCCGGGAACCATCCTCGCCTTCCTGGAGGCCAGGCTGCAGGAGCTGGACGGACCGGAGGCGAGGCTGGCGGACTACTTCGACTACATCGCCGGAACCAGCACCGGCGGTCTCATCACCGCCATGCTCACCGCGCCCGGCAAGGACAAGCGGCCTCTCTACGCTGCCAAGGACATCAACCACTTTTACATGCAGAACTGCCCGCGCATCTTTCCTCAGAAGAGCAGGCTTGCGGCCGCCATGTCCGCGCTGAGGAAGCCAAAGTACAACGGCAAGTGCATGCGCAGCCTGATTAGGAGCATCCTCGGCGAGACGAGGGTAAGCGAGACGCTGACCAACGTCATCATCCCTGCCTTCGACATCAGGCTGCTGCAGCCTATCATCTTCTCTACCTACGACGCCAAGAGCACGCCTCTGAAGAACGCTCTGCTCTCGGACGTGTGCATTGGCACGTCCGCCGCGCCGACCTACCTCCCGGCGCACTACTTCCAGACTGAAGACGCCAACGGCAAGGAGCGCGAATACAACCTCATCGACGGCGGTGTGGCGGCCAACAACCCGACGATGGTTGCGATGACGCAGATCACCAAAAAGATGCTTGCCAGCAAGGACAAGGCCGAGGAGCTGTACCCAGTGAAGCCGTCGAACTGCCGCAGGTTCCTGGTGCTGTCCATCGGGACGGGGTCGACGTCCGAGCAGGGCCTCTACACGGCGCGGCAGTGCTCCCGGTGGGGTATCTGCCGGTGGCTCCGCAACAACGGCATGGCCCCCATCATCGACATCTTCATGGCGGCCAGCTCGGACCTGGTGGACATCCACGTCGCCGCGATGTTCCAGTCGCTCCACAGCGACGGCGACTACCTGCGCATCCAGGACAACTCGCTCCGTGGCGCCGCGGCCACCGTGGACGCGGCGACGCCGGAGAACATGCGGACGCTCGTCGGGATCGGGGAGCGGATGCTGGCACAGAGGGTGTCCAGGGTCAACGTGGAGACAGGGAGGTACGAACCGGTGACTGGCGAAGGAAGCAATGCCGATGCCCTCGGTGGGCTCGCTAGGCAGCTCTCCGAGGAGAGGAGAACAAGGCTCGCGCGCCGCGTCTCTGCCATCAACCCAAGAGGCTCTAGATGTGCGTCGTACGATATCTAAGACAAGTGGCTTTACTGTCAGTCACATGCTTGTAAATAAGTAGACTTTATTTTAATAAAACATAAAAATATATATATGTTCTTGAATATAAAATTGATAACCAAATTAAAATTCGAACCATCACTTATACATAATTTTACTTTATTTTTTATAAAAC - >Zm00001eb019170_T001
GTTCATCACTAATCACACTTATTGTGCCCTCGACGAGTATCTATAGCTAGCTCATTAATCGATTCGGGGGTGTGTTGTCGAAGGCGGCAATGGCGAGCTACTCGTCGCGGCGTCCATGCAATACCTGTAGCACGAAGGCGATGGCCGGGAGCGTGGTCGGCGAGCCCGTCGTGCTGGGGCAGAGGGTGACGGTGCTGACGGTGGACGGCGGCGGCGTCCGGGGTCTCATCCCGGGAACCATCCTCGCCTTCCTGGAGGCCAGGCTGCAGGAGCTGGACGGACCGGAGGCGAGGCTGGCGGACTACTTCGACTACATCGCCGGAACCAGCACCGGCGGTCTCATCACCGCCATGCTCACCGCGCCCGGCAAGGACAAGCGGCCTCTCTACGCTGCCAAGGACATCAACCACTTTTACATGCAGAACTGCCCGCGCATCTTTCCTCAGAAGAGCAGGCTTGCGGCCGCCATGTCCGCGCTGAGGAAGCCAAAGTACAACGGCAAGTGCATGCGCAGCCTGATTAGGAGCATCCTCGGCGAGACGAGGGTAAGCGAGACGCTGACCAACGTCATCATCCCTGCCTTCGACATCAGGCTGCTGCAGCCTATCATCTTCTCTACCTACGACGCCAAGAGCACGCCTCTGAAGAACGCTCTGCTCTCGGACGTGTGCATTGGCACGTCCGCCGCGCCGACCTACCTCCCGGCGCACTACTTCCAGACTGAAGACGCCAACGGCAAGGAGCGCGAATACAACCTCATCGACGGCGGTGTGGCGGCCAACAACCCGACGATGGTTGCGATGACGCAGATCACCAAAAAGATGCTTGCCAGCAAGGACAAGGCCGAGGAGCTGTACCCAGTGAAGCCGTCGAACTGCCGCAGGTTCCTGGTGCTGTCCATCGGGACGGGGTCGACGTCCGAGCAGGGCCTCTACACGGCGCGGCAGTGCTCCCGGTGGGGTATCTGCCGGTGGCTCCGCAACAACGGCATGGCCCCCATCATCGACATCTTCATGGCGGCCAGCTCGGACCTGGTGGACATCCACGTCGCCGCGATGTTCCAGTCGCTCCACAGCGACGGCGACTACCTGCGCATCCAGGACAACTCGCTCCGTGGCGCCGCGGCCACCGTGGACGCGGCGACGCCGGAGAACATGCGGACGCTCGTCGGGATCGGGGAGCGGATGCTGGCACAGAGGGTGTCCAGGGTCAACGTGGAGACAGGGAGGTACGAACCGGTGACTGGCGAAGGAAGCAATGCCGATGCCCTCGGTGGGCTCGCTAGGCAGCTCTCCGAGGAGAGGAGAACAAGGCTCGCGCGCCGCGTCTCTGCCATCAACCCAAGAGGCTCTAGATGTGCGTCGTACGATATCTAAGACAAGTGGCTTTACTGTCAGTCACATGCTTGTAAATAAGTAGACTTTATTTTAATAAAACATAAAAATATATATATGTTCTTGAATATAAAATTGATAACCAAATTAAAATTCGAACCATCACTTATACATAATTTTACTTTATTTTTTATAAAAC
CDS Sequence
- >Zm00001eb019170_T002
ATGGCGAGCTACTCGTCGCGGCGTCCATGCAATACCTGTAGCACGAAGGCGATGGCCGGGAGCGTGGTCGGCGAGCCCGTCGTGCTGGGGCAGAGGGTGACGGTGCTGACGGTGGACGGCGGCGGCGTCCGGGGTCTCATCCCGGGAACCATCCTCGCCTTCCTGGAGGCCAGGCTGCAGGAGCTGGACGGACCGGAGGCGAGGCTGGCGGACTACTTCGACTACATCGCCGGAACCAGCACCGGCGGTCTCATCACCGCCATGCTCACCGCGCCCGGCAAGGACAAGCGGCCTCTCTACGCTGCCAAGGACATCAACCACTTTTACATGCAGAACTGCCCGCGCATCTTTCCTCAGAAGAGCAGGCTTGCGGCCGCCATGTCCGCGCTGAGGAAGCCAAAGTACAACGGCAAGTGCATGCGCAGCCTGATTAGGAGCATCCTCGGCGAGACGAGGGTAAGCGAGACGCTGACCAACGTCATCATCCCTGCCTTCGACATCAGGCTGCTGCAGCCTATCATCTTCTCTACCTACGACGCCAAGAGCACGCCTCTGAAGAACGCTCTGCTCTCGGACGTGTGCATTGGCACGTCCGCCGCGCCGACCTACCTCCCGGCGCACTACTTCCAGACTGAAGACGCCAACGGCAAGGAGCGCGAATACAACCTCATCGACGGCGGTGTGGCGGCCAACAACCCGACGATGGTTGCGATGACGCAGATCACCAAAAAGATGCTTGCCAGCAAGGACAAGGCCGAGGAGCTGTACCCAGTGAAGCCGTCGAACTGCCGCAGGTTCCTGGTGCTGTCCATCGGGACGGGGTCGACGTCCGAGCAGGGCCTCTACACGGCGCGGCAGTGCTCCCGGTGGGGTATCTGCCGGTGGCTCCGCAACAACGGCATGGCCCCCATCATCGACATCTTCATGGCGGCCAGCTCGGACCTGGTGGACATCCACGTCGCCGCGATGTTCCAGTCGCTCCACAGCGACGGCGACTACCTGCGCATCCAGGACAACTCGCTCCGTGGCGCCGCGGCCACCGTGGACGCGGCGACGCCGGAGAACATGCGGACGCTCGTCGGGATCGGGGAGCGGATGCTGGCACAGAGGGTGTCCAGGGTCAACGTGGAGACAGGGAGGTACGAACCGGTGACTGGCGAAGGAAGCAATGCCGATGCCCTCGGTGGGCTCGCTAGGCAGCTCTCCGAGGAGAGGAGAACAAGGCTCGCGCGCCGCGTCTCTGCCATCAACCCAAGAGGCTCTAGATGTGCGTCGTACGATATCTAA - >Zm00001eb019170_T001
ATGGCGAGCTACTCGTCGCGGCGTCCATGCAATACCTGTAGCACGAAGGCGATGGCCGGGAGCGTGGTCGGCGAGCCCGTCGTGCTGGGGCAGAGGGTGACGGTGCTGACGGTGGACGGCGGCGGCGTCCGGGGTCTCATCCCGGGAACCATCCTCGCCTTCCTGGAGGCCAGGCTGCAGGAGCTGGACGGACCGGAGGCGAGGCTGGCGGACTACTTCGACTACATCGCCGGAACCAGCACCGGCGGTCTCATCACCGCCATGCTCACCGCGCCCGGCAAGGACAAGCGGCCTCTCTACGCTGCCAAGGACATCAACCACTTTTACATGCAGAACTGCCCGCGCATCTTTCCTCAGAAGAGCAGGCTTGCGGCCGCCATGTCCGCGCTGAGGAAGCCAAAGTACAACGGCAAGTGCATGCGCAGCCTGATTAGGAGCATCCTCGGCGAGACGAGGGTAAGCGAGACGCTGACCAACGTCATCATCCCTGCCTTCGACATCAGGCTGCTGCAGCCTATCATCTTCTCTACCTACGACGCCAAGAGCACGCCTCTGAAGAACGCTCTGCTCTCGGACGTGTGCATTGGCACGTCCGCCGCGCCGACCTACCTCCCGGCGCACTACTTCCAGACTGAAGACGCCAACGGCAAGGAGCGCGAATACAACCTCATCGACGGCGGTGTGGCGGCCAACAACCCGACGATGGTTGCGATGACGCAGATCACCAAAAAGATGCTTGCCAGCAAGGACAAGGCCGAGGAGCTGTACCCAGTGAAGCCGTCGAACTGCCGCAGGTTCCTGGTGCTGTCCATCGGGACGGGGTCGACGTCCGAGCAGGGCCTCTACACGGCGCGGCAGTGCTCCCGGTGGGGTATCTGCCGGTGGCTCCGCAACAACGGCATGGCCCCCATCATCGACATCTTCATGGCGGCCAGCTCGGACCTGGTGGACATCCACGTCGCCGCGATGTTCCAGTCGCTCCACAGCGACGGCGACTACCTGCGCATCCAGGACAACTCGCTCCGTGGCGCCGCGGCCACCGTGGACGCGGCGACGCCGGAGAACATGCGGACGCTCGTCGGGATCGGGGAGCGGATGCTGGCACAGAGGGTGTCCAGGGTCAACGTGGAGACAGGGAGGTACGAACCGGTGACTGGCGAAGGAAGCAATGCCGATGCCCTCGGTGGGCTCGCTAGGCAGCTCTCCGAGGAGAGGAGAACAAGGCTCGCGCGCCGCGTCTCTGCCATCAACCCAAGAGGCTCTAGATGTGCGTCGTACGATATCTAA
Protein Sequence
- >Zm00001eb019170_P002
MASYSSRRPCNTCSTKAMAGSVVGEPVVLGQRVTVLTVDGGGVRGLIPGTILAFLEARLQELDGPEARLADYFDYIAGTSTGGLITAMLTAPGKDKRPLYAAKDINHFYMQNCPRIFPQKSRLAAAMSALRKPKYNGKCMRSLIRSILGETRVSETLTNVIIPAFDIRLLQPIIFSTYDAKSTPLKNALLSDVCIGTSAAPTYLPAHYFQTEDANGKEREYNLIDGGVAANNPTMVAMTQITKKMLASKDKAEELYPVKPSNCRRFLVLSIGTGSTSEQGLYTARQCSRWGICRWLRNNGMAPIIDIFMAASSDLVDIHVAAMFQSLHSDGDYLRIQDNSLRGAAATVDAATPENMRTLVGIGERMLAQRVSRVNVETGRYEPVTGEGSNADALGGLARQLSEERRTRLARRVSAINPRGSRCASYDI - >Zm00001eb019170_P001
MASYSSRRPCNTCSTKAMAGSVVGEPVVLGQRVTVLTVDGGGVRGLIPGTILAFLEARLQELDGPEARLADYFDYIAGTSTGGLITAMLTAPGKDKRPLYAAKDINHFYMQNCPRIFPQKSRLAAAMSALRKPKYNGKCMRSLIRSILGETRVSETLTNVIIPAFDIRLLQPIIFSTYDAKSTPLKNALLSDVCIGTSAAPTYLPAHYFQTEDANGKEREYNLIDGGVAANNPTMVAMTQITKKMLASKDKAEELYPVKPSNCRRFLVLSIGTGSTSEQGLYTARQCSRWGICRWLRNNGMAPIIDIFMAASSDLVDIHVAAMFQSLHSDGDYLRIQDNSLRGAAATVDAATPENMRTLVGIGERMLAQRVSRVNVETGRYEPVTGEGSNADALGGLARQLSEERRTRLARRVSAINPRGSRCASYDI
Source: Genetic information comes from the article