Information report for DEP3
Gene Details
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Functional Descriptions
- In the current study, we characterized a novel dense and erect panicle (EP) mutant, DEP3, derived from the Oryza sativa ssp.
- The panicle of the DEP3 mutant remained erect from flowering to full maturation, whereas the panicle of the wild type plant began to droop after flowering.
- Fine mapping and candidate gene analysis of dense and erect panicle 3, DEP3, which confers high grain yield in rice (Oryza sativa L.).
- Anatomical observations revealed that the DEP3 mutant had more small vascular bundles and a thicker culm than wild type plants, explaining the EP phenotype.
- Taken together, our results indicated that the patatin-like PLA2 might play a significant role in the formation of vascular bundles, and that the DEP3 mutant may provide another EP resource for rice breeding programs.
- The DEP3 mutation also regulated other panicle characteristics, including panicle length, grain shape and grain number per panicle.
- Overexpression of OrMKK3 influenced the expression levels of the grain size-related genes SMG1, GW8, GL3, GW2, and DEP3.
Functional Keywords
- erect , vascular-bundle , yield , grain-yield , grain , flower , grain-number , panicle , breeding , culm , grain-size
Literature and News
Homologs
- Arabidopsis thaliana: AT2G39220, AT2G26560
- Saccharum spontaneum: Sspon.01G0023910-2B
- Setaria italica: Seita.8G194900
- Setaria viridis: SEVIR_8G203700v2
- Triticum aestivum: TaMTL-4B, TaMTL-4A
Sequences
cDNA Sequence
- >LOC_Os06g46350.1
GACCAAGCCGGAGCACCCACCTCAGCTTCTCAGCTTCAGCTTCGCTTCGCTACAGAAAAGCATCTCGGAAAAGCCAAGAACCAAACGGCTCAGCTCTACGTCGCGTTTGCTAATGGCGACAACCTCCTCGCTCGCGCTGCCGCTGTTCGCCGGCGGCGGCGGCTCCGACCGCCTCAGCCAGGAGATCTTCTCCATCCTCGAGTCCAACTTCCTCTTCGGCGCGCCGCCGCCGGAGGGGCCTGCAGGTTACTACTCCTCCGTTGGCCGCGTCCGCGTGCTCTCGATTGATGGCGGCGCCGACGGCGGCGCGCTCGCCGCGGCCGCGCTGGTCCGCCTCGAGCGCCGGCTTAAGGAGCTCTCCGGGAACCCCGATGCCCGCGTCGCCGACTACTTTGACCTGGCGGCCGGCTCCGGCGCCGGCGGGTTCCTCGCCGCCGCGTTGTTCGCATGCCGGATGCCGGCGGAGGCGGCGCGCGACGTCGTTGCCAGGAACCGGAAGGTGTTCTCCGGCCGCCGTGGGCGGGGGGGTGGCCTGTTCTGGAGGCCGGAGTCGGTGTTCAAGAAGGTGTTCGGCGACCTGACGGTGAGGGACGCCGCCAAGCCGCTGCTGATACCCTGCTACGACATGGCGACGGCGGCGCCGTTCGTCTTCTCCCGCGCCGACGCCGTCGAGGCCGACGCGTTCGACTTCCCGCTGTGGCAGGTCTGCGCCGCGGCGTGCGGCGTGGGCCCCGCCGAGGTCGCCTCCCTCGACGGCCGGACCAGGCTCCGCGCCGCGGCGGCCACGGGCGGCGGCGGCGCCGTGTCCAACCCGGCCGCGGTGGCCGTCACCCACGTGCTCCACAACAAGCGCGAGTTCCCCTTCGCCGCCGGCGCCGGCGACCTCGTCGTGCTGTCCCTCGGCGGGAACAACGCCGCCGCCGGCCCCCGCGCGTCGTCGTCGAGCCTCCTGCGCATCGCCGGAGCTTGCCAGGCCGACATGGTGGACCAAGCTGTATCAATGGCGTTCGGCGAGTGCAGGGCAACCAACTACATCCGTATCCAGGGCAATGGCATTGTGGCCGGAGCGGCGGCGGCGACGGCGGAGGCGGCGATGACGGAGAGGAGCGTGGAGTCGGTGCTGTTCAGGGGGAAGAAGGTGATGGCGCAGACGAACGGCGAGCGGCTGGACGGCGTGGCGGAGCAGCTGGTGAGGGAGCACCACCGGAGGATGGAGAGCAAGGCGCCGGTGGTGCTCATCAAGCCGTCGGCGACGCCGCGGACGTCGTCGTCGTCGGCGTCCACGCTCATCACCGTCTCCACCAACGCCTCGTCCGAGTCGCCATGA
CDS Sequence
- >LOC_Os06g46350.1
ATGGCGACAACCTCCTCGCTCGCGCTGCCGCTGTTCGCCGGCGGCGGCGGCTCCGACCGCCTCAGCCAGGAGATCTTCTCCATCCTCGAGTCCAACTTCCTCTTCGGCGCGCCGCCGCCGGAGGGGCCTGCAGGTTACTACTCCTCCGTTGGCCGCGTCCGCGTGCTCTCGATTGATGGCGGCGCCGACGGCGGCGCGCTCGCCGCGGCCGCGCTGGTCCGCCTCGAGCGCCGGCTTAAGGAGCTCTCCGGGAACCCCGATGCCCGCGTCGCCGACTACTTTGACCTGGCGGCCGGCTCCGGCGCCGGCGGGTTCCTCGCCGCCGCGTTGTTCGCATGCCGGATGCCGGCGGAGGCGGCGCGCGACGTCGTTGCCAGGAACCGGAAGGTGTTCTCCGGCCGCCGTGGGCGGGGGGGTGGCCTGTTCTGGAGGCCGGAGTCGGTGTTCAAGAAGGTGTTCGGCGACCTGACGGTGAGGGACGCCGCCAAGCCGCTGCTGATACCCTGCTACGACATGGCGACGGCGGCGCCGTTCGTCTTCTCCCGCGCCGACGCCGTCGAGGCCGACGCGTTCGACTTCCCGCTGTGGCAGGTCTGCGCCGCGGCGTGCGGCGTGGGCCCCGCCGAGGTCGCCTCCCTCGACGGCCGGACCAGGCTCCGCGCCGCGGCGGCCACGGGCGGCGGCGGCGCCGTGTCCAACCCGGCCGCGGTGGCCGTCACCCACGTGCTCCACAACAAGCGCGAGTTCCCCTTCGCCGCCGGCGCCGGCGACCTCGTCGTGCTGTCCCTCGGCGGGAACAACGCCGCCGCCGGCCCCCGCGCGTCGTCGTCGAGCCTCCTGCGCATCGCCGGAGCTTGCCAGGCCGACATGGTGGACCAAGCTGTATCAATGGCGTTCGGCGAGTGCAGGGCAACCAACTACATCCGTATCCAGGGCAATGGCATTGTGGCCGGAGCGGCGGCGGCGACGGCGGAGGCGGCGATGACGGAGAGGAGCGTGGAGTCGGTGCTGTTCAGGGGGAAGAAGGTGATGGCGCAGACGAACGGCGAGCGGCTGGACGGCGTGGCGGAGCAGCTGGTGAGGGAGCACCACCGGAGGATGGAGAGCAAGGCGCCGGTGGTGCTCATCAAGCCGTCGGCGACGCCGCGGACGTCGTCGTCGTCGGCGTCCACGCTCATCACCGTCTCCACCAACGCCTCGTCCGAGTCGCCATGA
Protein Sequence
- >LOC_Os06g46350.1
MATTSSLALPLFAGGGGSDRLSQEIFSILESNFLFGAPPPEGPAGYYSSVGRVRVLSIDGGADGGALAAAALVRLERRLKELSGNPDARVADYFDLAAGSGAGGFLAAALFACRMPAEAARDVVARNRKVFSGRRGRGGGLFWRPESVFKKVFGDLTVRDAAKPLLIPCYDMATAAPFVFSRADAVEADAFDFPLWQVCAAACGVGPAEVASLDGRTRLRAAAATGGGGAVSNPAAVAVTHVLHNKREFPFAAGAGDLVVLSLGGNNAAAGPRASSSSLLRIAGACQADMVDQAVSMAFGECRATNYIRIQGNGIVAGAAAATAEAAMTERSVESVLFRGKKVMAQTNGERLDGVAEQLVREHHRRMESKAPVVLIKPSATPRTSSSSASTLITVSTNASSESP*