Information report for Thecc1EG015563t1
Gene Details
|
|
Functional Annotation
- Refseq: XP_007039268.2 — PREDICTED: trihelix transcription factor GTL1 isoform X1
- TrEMBL: A0A061G9R2 — A0A061G9R2_THECC; Duplicated homeodomain-like superfamily protein, putative isoform 1
- STRING: EOY23769 — (Theobroma cacao)
- GO:0008361 — Biological Process — regulation of cell size
- GO:0009414 — Biological Process — response to water deprivation
- GO:0010090 — Biological Process — trichome morphogenesis
- GO:0030308 — Biological Process — negative regulation of cell growth
- GO:0032876 — Biological Process — negative regulation of DNA endoreduplication
- GO:0045892 — Biological Process — negative regulation of transcription, DNA-templated
- GO:2000037 — Biological Process — regulation of stomatal complex patterning
- GO:2000038 — Biological Process — regulation of stomatal complex development
- GO:0005634 — Cellular Component — nucleus
- GO:0043565 — Molecular Function — sequence-specific DNA binding
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Citrus sinensis: orange1.1g003766m, orange1.1g005124m, orange1.1g005262m
- Fragaria vesca: mrna01828.1-v1.0-hybrid
- Gossypium arboreum: Cotton_A_17373_BGI-A2_v1.0, Cotton_A_26259_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A12G2206, Gh_D12G2385, Gh_A02G0934, Gh_D03G0831
- Juglans regia: WALNUT_00019222-RA
- Malus domestica: MDP0000451038
- Manihot esculenta: Manes.01G001900.1.p, Manes.01G001900.2.p, Manes.01G001900.4.p
- Prunus mume: XP_008239287.1
- Prunus persica: Prupe.5G137600.1.p, Prupe.5G137600.2.p
- Ricinus communis: 30068.m002635
Sequences
CDS Sequence:
- >Thecc1EG015563t1|Theobroma_cacao|Trihelix|Thecc1EG015563t1
ATGCAGCAAGGAGGAGGAGAAGGAGGAGGGGGGCATCAATCTCAATACGGGGAGATGGGTGCTCCAACAACAGCAGTAGCAACAACGACGGGTGCAGTGAGCAGCAGCCACATGGTAAGCGAGCAGTCTGAGCAGTTAGTGGAAGCGGCATCGCCTATAAGCAGTAGGCCGCCTGCCACTGGGAATTTGGATGAATTCATGAGGTTAGCAAGTGGTGGAGGAGATGACGGAGGAGATGAAGGGGATCGAGCAGGTGGAGGAGGAGGAGGAGCTGGAGTTGCAAGTGGCAATAGGTGGCCCCGTCAAGAGACTCTTGCTCTTCTCAAGATTAGGTCAGATATGGATGCTGCTTTCCGTGATGCCACCGTCAAGGGCCCTCTATGGGAAGATGTTTCCAGGAAGCTAGCGGAGCTGGGTTACAAAAGGAGTGCCAAAAAGTGCAAGGAAAAATTCGAGAACGTCCACAAGTACTACAAGCGAACAAAAGAAGGGCGAGCTGGCCGTCAAGATGGTAAGAGTTACAAGTTTTTCAGCCAGCTAGAGGCTCTCCATACAACTTCTTCTGCCACTGCTGCTGCTAACCTATCAACACCAGTCACACCTGTCACTGCCGCTAGCACCGCCAGCCTGGACGTGGCTCCCGTTTCGGTTGGGGTTCATATGCCCATCTCGTCTGTCAGAATTCCACCTGCAACTATCCCAATGTCTTCCTCTATGTTAGCCATGCCTGGATCTGCTCCTGCATCCGTGCCAGTGCCACCAGTAGGAGCAGCGCCGGCGTCAGGACATCCTATCACCACCACAGCCGCTCCATTTGGAATCAGCTTCTCTTCTAACAGCTCTTCCTCTTCTCAAGGCTTTGAAGACGATGATGACGACGATGACGAAGAAGATGAACCTGGAGGAGAACCATCCAACATGGCTGGCACTAGCCGGAAACGTAAAAGACAGTCGTCGAGAGGGGGCGGTAGTACGACCAGGAGGATGATGGAGTTCTTCGAGGGTCTAATGAAACAGGTCATGCAGAAGCAAGAATCCATGCAGCAGAGATTTTTAGAAGCCATAGAGAAGAGAGAGCAAGATAGGATGATAAGAGAAGAAGCTTGGAAAAGACAAGAAATGGCGAGATTAACTCGCGACCATGAACTTATGGCTCACGAACGTGCCATTGCTGCTTCTAGGGATGCTGCTATTATTTCTTTTTTGCAGAAGATTACTGGTCAGACTGTACAGTTACCCACAACTGTCACTGTCTCCGCTGCTCCACCTCCACCGACACAACCAGCCGTGCCAGTTGTTCCACCTCCGGCTTCTATTCCTACAGCAGCTTCACCATTGCATCATCCACCGTCATTACCACAACAACAGCGTAGCTCTCAACAGCAGCAACAGTCAGTACAGCCGCACCATCAACATCAGCAACAGCCACAAGCTGTTCACCAGCAGCAGCATCAAGCTCAACCTCAAAACACTGAAGTTGTGAGGCATCATCAACAACCTATTTCTTCAGATGTAGTAATGGCTATCCCGGAGCAACAGGTCCCACCACAGGAGATTGGTCGGAGTGGGAACTTGGAGCCTGCCTCTTCTAGGTGGCCTAAAGCTGAAGTTCTTGCACTTATAAACCTGAGGAGTGGGCTTGAATCCAGGTACCAAGAGGCTGGGCCGAAGGGCCCTCTTTGGGAGGAGATCTCGGCTGGTATGTCAAGGATGGGCTACAAGAGAAGCGCCAAGCGATGCAAGGAAAAATGGGAGAACATCAACAAGTACTTCAAGAAGGTCAAAGAAAGTAATAAGAAACGTCCCGAGGATGCCAAAACCTGCCCCTATTTTCACCAACTCGATGCCCTTCACCGTAAGAAAATACTTGGAGGAGGGACTAGCGGTGGTTTCAGTAGCTTTAGTGACCAGAATAGGCCTCAAGAAGAAACGTCACAGCAGCATCTAGATACGAGTGAAGCCCCACCAATCACGGCAGCGCCGCAATCGACGCAGCCTACTGATCAATCAGAAAACAAAACTGGAGCTACTGCTGATGTGCTGACAAGAAAAGAAGGTTTACCTGGGAGTTTCTGTGGAGAAGGAAACGGTGAAGCTGCAAAGAAGCCAGAAGACATTGTGATGGAGCTGATGGAGGACCAGGGGATGCACCATCAAGGACAATCCTTGTTGGTGGATGGCTATGGTAAGATTGATGAACCTGACAGTGATAATATGGTTCACGAGGAAGATGAAGATGAGGACGAAGATGATGAAGATGATGACGAATTGGAAGAAGAGCGAAAGATGGCTTATAAAATAGAATATCAAAGACAGAATGCAAGCACTCCCAACGGAGGAGGGAATGGGGCGCCCTCCTTTCTGGCCATGGTTCAATAA
Protein Sequence:
- >Thecc1EG015563t1|Theobroma_cacao|Trihelix|Thecc1EG015563t1
MQQGGGEGGGGHQSQYGEMGAPTTAVATTTGAVSSSHMVSEQSEQLVEAASPISSRPPATGNLDEFMRLASGGGDDGGDEGDRAGGGGGGAGVASGNRWPRQETLALLKIRSDMDAAFRDATVKGPLWEDVSRKLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKSYKFFSQLEALHTTSSATAAANLSTPVTPVTAASTASLDVAPVSVGVHMPISSVRIPPATIPMSSSMLAMPGSAPASVPVPPVGAAPASGHPITTTAAPFGISFSSNSSSSSQGFEDDDDDDDEEDEPGGEPSNMAGTSRKRKRQSSRGGGSTTRRMMEFFEGLMKQVMQKQESMQQRFLEAIEKREQDRMIREEAWKRQEMARLTRDHELMAHERAIAASRDAAIISFLQKITGQTVQLPTTVTVSAAPPPPTQPAVPVVPPPASIPTAASPLHHPPSLPQQQRSSQQQQQSVQPHHQHQQQPQAVHQQQHQAQPQNTEVVRHHQQPISSDVVMAIPEQQVPPQEIGRSGNLEPASSRWPKAEVLALINLRSGLESRYQEAGPKGPLWEEISAGMSRMGYKRSAKRCKEKWENINKYFKKVKESNKKRPEDAKTCPYFHQLDALHRKKILGGGTSGGFSSFSDQNRPQEETSQQHLDTSEAPPITAAPQSTQPTDQSENKTGATADVLTRKEGLPGSFCGEGNGEAAKKPEDIVMELMEDQGMHHQGQSLLVDGYGKIDEPDSDNMVHEEDEDEDEDDEDDDELEEERKMAYKIEYQRQNASTPNGGGNGAPSFLAMVQ*