Information report for 30068.m002635
Gene Details
|
|
Functional Annotation
- Refseq: XP_002518968.1 — trihelix transcription factor GTL1 isoform X1
- Swissprot: Q39117 — TGT2_ARATH; Trihelix transcription factor GT-2
- TrEMBL: B9RYZ9 — B9RYZ9_RICCO; Transcription factor, putative
- STRING: XP_002518968.1 — (Ricinus communis)
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Citrus sinensis: orange1.1g003766m, orange1.1g005262m, orange1.1g005124m
- Fragaria vesca: mrna01828.1-v1.0-hybrid
- Gossypium hirsutum: Gh_A02G0934, Gh_D03G0831
- Juglans regia: WALNUT_00025256-RA
- Manihot esculenta: Manes.01G001900.1.p, Manes.01G001900.2.p, Manes.01G001900.4.p, Manes.01G001900.3.p
- Populus trichocarpa: Potri.001G454500.1, Potri.001G454500.2
- Prunus persica: Prupe.5G137600.1.p
Sequences
CDS Sequence:
- >30068.m002635|Ricinus_communis|Trihelix|30068.m002635
ATGCAGCAAGGAGGAGGGGATCCCACTCAATCCCCATATGGACTCCCATCTGTTACAATGACCACTCACATGCTGGTCTCAGCCGCAGTCGACCAACAGCAGCAGCAGCTAGTAGAAGAGGCCTCACCCATTAGCAGCCGACCTCCCGCGACCACCGGCGGGAATTTGGATGACTTTATGAGGCTATCAGGGAGCGCAGCCGACGAGGATGAATTAGCAGATCGAGCTACAAGCGGTAACAGATGGCCTCGTCAAGAAACAATTGCTCTTCTCCAAATTAGGTCTGATATGGATGCCGCCTTTCGCGATGCCACCGTCAAGGGTCCTCTTTGGGAAGATGTCTCCAGGAAGCTAAATGAGCTAGGCTACAAGAGAAGCGCAAAAAAATGTAAGGAAAAATTTGAGAATGTGCACAAATATTACAAACGCACAAAGGAAGGGCGAGGGGGTCGCCAAGATGGGAAAACCTATAGGTTTTTCACCCAGCTAGAGGCTCTCCACAACACTACCGGCGCAACTATCAACATAGTCTCACCCTCTCAGCCAATATCCACTGCCGCCACCACAGCCACAACCACCTTAGATGTCTCTCCTGTTTCTATTGGAATCCCTATGCCTGCAGTCTCCTCCGTTAGAAATTATCCACCTTCAACTGTTGGCATCTCCACAATATTTCCTGCTGTTACTGCACCGCTGCCGCCTCCACCTCCACCTCCACGTGCAGGTATTAGCTTCTCGTCAACTTCAAATGGTTCTTCTTCTTCCCCAAGCTTCCAAGATGATGATGATGATGATGATGATGATGATGAACCATCCAACATTGCTGCTGGTTCCAGCCGCAAACGTAAAAGGCATTCTTCTGAAGGAGGCACCCGCCGGATGATGGACTTTTTTGAGGGGCTTATGAAACATGTTATGCAAAAGCAAGAGGCCATGCAACAGAGGTTCTTGGACGCCATAGAAAAAAGAGAAAATGACCGGGTGGTCAGAGAAGAAGCCTGGAAAAGGCAAGAGATGGCCAGATTGAGCCGCGAGCATGAGCTTATGGCTCAGGAGAGGGCCATTTCTGCTTCCAGAGATGCTGCCATAGTTTCCTTTATACAAAAGATTACTGGCCAAACCATCCAATTGCCTTCTCCTGTAACTATTCCAGCAGTCCTACAGCCACCACCCGCGCCCCAATCGAAACCTGTGCCATTGGCACCCATAGTCACTGTCTCAATCCAACAGCCACCACTCCCGCAACCACCATCAGCTGCAGCTCCACCACCACCTCAACAACAAGACAAGCATCAAGTTCATCGTCATCATGATCGCCAATCATCTATTTCCTCCGAATTGGCAATTGGTGTCGCAGAGGGAATGCCGCAAGAGATTGGCAGTAGTAGGAGCCTTGAACCAAGCTCTTCAAGATGGCCGAAAGCAGAAGTACTAGCACTTATAAAATTGAGGAGTGGGCTTGAGTTCAGATACCAGGAGGCGGGGCCCAAGGGCCCACTTTGGGAAGAAATCTCAGCGGGGATGCAGCGGATGGGCTACAAGAGGAGTGCCAAGAGATGTAAGGAGAAATGGGAAAACATCAACAAGTACTTCAAGAAGGTCAAAGAAAGTAACAAGAAACGTCCTGAAGATGCCAAGACCTGTCCCTATTTTCACGAACTAGATGCGCTTTATAGGAAAAAGGTACTTGTCACAACCGCTGGAGGTGGAACCATTAGCACTAGTGGATTTGCCAACCAAATCACTAGGCCGGAACAGCAGCAGCAGCAGGAGAGTACAAAGCCAGATGATAGGACTGAGGCCTCGGCAACATTACTCCCGGCACAATCTTCTCAATCACAAGCCAAAGGTGGAAGTGGTGCTGATGCTAATACTGGTTTGCCTGGTAATCTCTTTGGAGAAGGAAATGCAGGAGCAGGAAACAAGCCAGAAGACATCGTGAAGGAGCTTATACAACCGCAGGGGCCGCAAAAGCAACAAGAATCACAGTTTACGGTGCATGACTATGAGAAAATGGAGGAAGATGATGACAGTGACATAGATCATGAGAATGATGAAGATGATGTCGAAGAATTGGATCTTGAGGACGACGAAGAAGAAGATGACGATGAAGTACAAGAAGAAGAGAGGAAGATGGCCTACAAAATAGAATATCAGAGGCCGAACACGAGCGCCTCTAATGGGGGAGGGAATGGGGCGCCCTCCATTTTGGCCATGGTCCAGTAA
Protein Sequence:
- >30068.m002635|Ricinus_communis|Trihelix|30068.m002635
MQQGGGDPTQSPYGLPSVTMTTHMLVSAAVDQQQQQLVEEASPISSRPPATTGGNLDDFMRLSGSAADEDELADRATSGNRWPRQETIALLQIRSDMDAAFRDATVKGPLWEDVSRKLNELGYKRSAKKCKEKFENVHKYYKRTKEGRGGRQDGKTYRFFTQLEALHNTTGATINIVSPSQPISTAATTATTTLDVSPVSIGIPMPAVSSVRNYPPSTVGISTIFPAVTAPLPPPPPPPRAGISFSSTSNGSSSSPSFQDDDDDDDDDDEPSNIAAGSSRKRKRHSSEGGTRRMMDFFEGLMKHVMQKQEAMQQRFLDAIEKRENDRVVREEAWKRQEMARLSREHELMAQERAISASRDAAIVSFIQKITGQTIQLPSPVTIPAVLQPPPAPQSKPVPLAPIVTVSIQQPPLPQPPSAAAPPPPQQQDKHQVHRHHDRQSSISSELAIGVAEGMPQEIGSSRSLEPSSSRWPKAEVLALIKLRSGLEFRYQEAGPKGPLWEEISAGMQRMGYKRSAKRCKEKWENINKYFKKVKESNKKRPEDAKTCPYFHELDALYRKKVLVTTAGGGTISTSGFANQITRPEQQQQQESTKPDDRTEASATLLPAQSSQSQAKGGSGADANTGLPGNLFGEGNAGAGNKPEDIVKELIQPQGPQKQQESQFTVHDYEKMEEDDDSDIDHENDEDDVEELDLEDDEEEDDDEVQEEERKMAYKIEYQRPNTSASNGGGNGAPSILAMVQ