Information report for Spipo21G0041200
Gene Details
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Functional Annotation
- Refseq: XP_009389115.1 — PREDICTED: trihelix transcription factor GTL1 isoform X1
- Refseq: XP_010933772.1 — trihelix transcription factor GTL1 isoform X1
- TrEMBL: A0A3S3N709 — A0A3S3N709_9MAGN; Trihelix transcription factor GTL1 isoform X1
- STRING: EOY23769 — (Theobroma cacao)
- STRING: GSMUA_Achr11P03520_001 — (Musa acuminata)
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Brachypodium distachyon: Bradi3g30457.2.p, Bradi3g30457.1.p, Bradi3g30457.3.p
- Citrus sinensis: orange1.1g003766m
- Fragaria vesca: mrna01828.1-v1.0-hybrid
- Gossypium hirsutum: Gh_A02G0934
- Manihot esculenta: Manes.01G001900.1.p, Manes.01G001900.2.p
- Musa acuminata: GSMUA_Achr11P03520_001, GSMUA_Achr9P18800_001
- Prunus mume: XP_008239287.1
- Prunus persica: Prupe.5G137600.1.p
- Ricinus communis: 30068.m002635
- Sesamum indicum: XP_011081349.1
Sequences
CDS Sequence:
- >Spipo21G0041200|Spirodela_polyrhiza|Trihelix|Spipo21G0041200
ATGAGCCCCTTCGTGGCTGCCGGGACGGGAAGCAGAGCTCACGTGCTTGGAATTCCGCAGCAGCCGCACCAGCAGAAGGCGGAGGGCGGTCAGCACCAGCCGCCTCTGCCGCCGTCTCCGATGTTGGCTGAGGCGCCCACCCCCATGACCAGCCGCCAGCCGCTACGCACGGGCAATTTCGATGAGCTAGCTCCGGTGGCACCGGAGGGTTTCTCTGATGAGGGGACGATGGCCCCTGTGGGGGAGGAGACGGACAAGGGAGGTGTTCCAGGAAACCGGTGGCCACAGGAGGAGACGCTGGCGCTTCTCAGAATCCGCTCCGAGATGGATGCTGCCTTCCGGGATGCCACGCTCAAGGGCCCGCTCTGGGAGGAGGTCTCCAGGAAATTGAGCCAGCTGGGATACAAGAGGAGCGCCAAGAAGTGCAAGGAGAAATTCGAGAACGTTCAGAAGTATTACAAGCGCACAAAGGACGGCCGCGCTGGCCGCCAGGACGGCAAAAGCTACCGCTTCTTCAGGCAATTGGAAGCCCTCTATGGCAGCACCAAAACACCCGCCACCACTGCAGCTGGCGGCGCCGCTGACCTTCTGCCACCGTCGGTTGACATGGGCAGCTCCTCGGCCAGGCTGCAACCGTCTCCCTTGAACGCCATCCCTCCGCACCTCGGAGCGTCACCTCACCTGATCCCCGACCGCGTGGGGGCCCTTGCCGACTTCTCCTCGGACGACTCCTCGGCTTCTGACTCGGACGGACAAGACACGGAGGAGGGTCTCCCGGGGGAACAGACGAAACGCAAGCGAAAGGGCGGCAGCGGTGGTGGCGGGGGGAAAAAGAAGATGATGGCTTTCTTCGAGGGCTTGACGAGGCAGGTGATGGAGAGGCAGGAGGCGATGCAGCAGAAGTTCCTGGAGATGATCGAGAAGCGCGAGCAAGATAAGATGATCAGAGACGAGGCGTGGCGGCGGCAAGAGATGGCGCGTCTCACCCGCGAGCACGAGGCGATGGCTCAGGAGCGCGCCATGTCTGCAACTAGGGACGCCACCATATTGGCGTTCCTGCAGAAGCTGACGGGACACACCATATCTTTGCCGTCGGCCATTGCCACCGCCGTCGCTCCGCCCGCTGCGCCACAGCAGCAAGCGGTGAATATGATGGCATCAGTTCCAACCTCGTCACCAGCTAAGAGGCCGCAGCCTCCCCTGCAGACCGTCCATCAACAGGCATCCGAATTATTAGGCCGTGTACAAGCTCCGTCCTTGGATGTGGTGCTACAGCCGGAGACGCAAGAGGTGATGGACCTGGCGTCGTCAAGGTGGCCTAAGTCGGAGGTGCACGCGCTCATAAGTCTGCGTAGTGGGATGGAAACTAGGTACCAGGAAGCGGGGCCCAAAGCTCCTCTGTGGGAGGAGATCGCTGCGGGAATGCGGCGGATGGGGTACAACCGGAGTTCCAAGCGTTGCAAGGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAGGTAAAGGACAGCAAGAAGAAGCGTCCCGAGGATGCCAAGACTTGCCCATACTTCCACCAGCTAGACGCCCTCTACCGCAAGAAGAACGTTGGAGCCGGCAGCAGCTCGAGCGATCATCACAGAGCTGACATAGAGCAGCACGAGGTGTCTTTCCCCACTTCTCAGCCAGTCCCTCAGGAGTCTCACTTGGAATCGGATCTCAAGAGAGACAACGGTAGAGAGGCTGAGGGAAACGGATCTTCATCCCTCAGTGGTAGCGGCCGTTCTGGCTTCGTTGACGAAGGGACCAGCGCCGACGGGCCGGCGAAGAAGCCAGAAGACATTATGAAGGACCTGATGGATCAGCAGGCTCAGAGAGAAGCGGAGGATTCCGACAAGCTGGAGGAGACCGACAGCGATGGGGTGGAGCAGGCGGATGATGACGATGATGAGGACGACGAGAAGGGCAAGATGGCTTACAAGATCCAGTACCAGCAGAGGCCCGTTGTCAACGGCTCCTCCAGCGGTGGTGAGAACCAATCAGCGGCTGCCGCTGCAGCAGCAGCCGCCGCAGCCGGCTCCTTCATGGCCATGGTTCAGTAA
Protein Sequence:
- >Spipo21G0041200|Spirodela_polyrhiza|Trihelix|Spipo21G0041200
MSPFVAAGTGSRAHVLGIPQQPHQQKAEGGQHQPPLPPSPMLAEAPTPMTSRQPLRTGNFDELAPVAPEGFSDEGTMAPVGEETDKGGVPGNRWPQEETLALLRIRSEMDAAFRDATLKGPLWEEVSRKLSQLGYKRSAKKCKEKFENVQKYYKRTKDGRAGRQDGKSYRFFRQLEALYGSTKTPATTAAGGAADLLPPSVDMGSSSARLQPSPLNAIPPHLGASPHLIPDRVGALADFSSDDSSASDSDGQDTEEGLPGEQTKRKRKGGSGGGGGKKKMMAFFEGLTRQVMERQEAMQQKFLEMIEKREQDKMIRDEAWRRQEMARLTREHEAMAQERAMSATRDATILAFLQKLTGHTISLPSAIATAVAPPAAPQQQAVNMMASVPTSSPAKRPQPPLQTVHQQASELLGRVQAPSLDVVLQPETQEVMDLASSRWPKSEVHALISLRSGMETRYQEAGPKAPLWEEIAAGMRRMGYNRSSKRCKEKWENINKYFKKVKDSKKKRPEDAKTCPYFHQLDALYRKKNVGAGSSSSDHHRADIEQHEVSFPTSQPVPQESHLESDLKRDNGREAEGNGSSSLSGSGRSGFVDEGTSADGPAKKPEDIMKDLMDQQAQREAEDSDKLEETDSDGVEQADDDDDEDDEKGKMAYKIQYQQRPVVNGSSSGGENQSAAAAAAAAAAAGSFMAMVQ*