Information report for Oropetium_20150105_21620A
Gene Details
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Functional Annotation
- Refseq: XP_025794483.1 — trihelix transcription factor GTL1-like isoform X1
- Refseq: XP_025794484.1 — trihelix transcription factor GTL1-like isoform X1
- Swissprot: Q39117 — TGT2_ARATH; Trihelix transcription factor GT-2
- TrEMBL: A0A2S3IKR8 — A0A2S3IKR8_9POAL; Uncharacterized protein
- STRING: GRMZM2G414159_P01 — (Zea mays)
- GO:0010192 — Biological Process — mucilage biosynthetic process
- GO:0044212 — Molecular Function — transcription regulatory region DNA binding
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Sequences
CDS Sequence:
- >Oropetium_20150105_21620A|Oropetium_thomaeum|Trihelix|Oropetium_20150105_21620A
ATGGCCGAGGCGCCGTCGCCCATCAGCAGCCGGCCGCCGGCGCAGCAGTTCGACGAGCTCGCCGCCGCCGCCGGGGGCTTCGACGCGGAGGGTCTGGCGGCCGCCGCCGCCGGCGAGGAGGGCGCGAGCGGTGGCTCAGCGGGCAACCGGTGGCCGCGGCAGGAGACGCTGGCGCTGCTCAAGATCCGGCAAGACATGGACGCCGCCTTCCGGGACGCCACCCTCAAGGGTCCGCTCTGGGAGCAAGTCTCCAGGAAGCTGGCGGAGCAAGGGTACAGCCGGAGCGCCAAGAAGTGCAAGGAGAAGTTCGAGAACGTGCACAAGTACTACAAGCGCACCAAGGAGAGCCGGGCCGGCCGGAACGACGGCAAGACGTACCGGTTCTTCACGCAGCTTGAGGCCCTGCAAGCGACCGGGTCTCATCAGGCGCCGGCGCCGGCTCCCTCTCCGGTGACGTCGTTCGCGCCGCCGTCAACGGCCGTCGGAGTCTCGGGGCCCCTTCCAGTGCGGGCGCCGGCGGAGCCGCCGCCTGCCTTGTCAGGCATGCCGACGAAGATGGGCAACATGAGCTTCTCGACGTCCAACACGGAGGATTACTCCGACGAGGACGACTCGGACGGCGAGGGCACCCAGGAGCTGGGAGCGGACCAGAACAGCGGGAAGAGGAAGAGGGTGTCGGAGAGCGGCGGCGCCGCAACCGGCGGCAGCGGCAGCGGGAAGATGATGAGGTTCTTCGAGGGGCTGATGAAGCAGGTGATGGAGCGGCAGGAGGCGATGCAGCAGCGGTTCCTGGAGGCCATCGAGAAGCGGGAGCAGGACCGCATGATCCGCGAGGAGGCGTGGCGGCGGCAGGAGATGGCGCGGCTCGCGCGGGAGCAGGAGATCCTCGCGCAGGAGCGCACCATGGCCGCCTCCCGCGACGCCGCCGTGCTCTCCTTCATACAGAAGATCACCGGGCAGACCATCCCGATGCCGTCCATCGCGGCGCCAGCCATCAACGTCATGCCGCCACCGCCGTCCGCCTCGCCAGCTCCGCCACCGTCGTCACAGCCGCCGCCACCACCACAACCGCCACAGCCCTCGCCGCAGCCGCAGCACAAGTCGCCGACGCCATCGACGCCGCAACAAGCGCCGCCACCACCGCATCAGCAGAAGCAATCCTCGGACATTGTCATGACGCCAGCAGGCGAGACCACGCCGCACGCTGCCGACACCCCGGGTTACGATGGCGGGTCCGGTGGCGCGACGTCGTCGCGGTGGCCTAAGGCCGAGGTGCACGCCCTGATCCAGCTGCGGAGCAAAATGGACATGCGGTACCAGGAGGCCGGGCCCAAGGGCCCCCTCTGGGAGGAGATCTCCGCCGGCATGCGGCGGCTGGGCTACAACCGGAACGCGAAGCGGTGCAAGGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAGGTGAAGGAGAGCAACAAGAAGCGCCCCGAGGACTCCAAGACCTGTCCCTACTTCCACCAGCTCGACGCGCTCTACCGCAACAAGGCGCTCATCGGTTCCTCGTCCGGCGGCGCCGGGGCGGCCCATGCATCGTCGACAACAACGCAGGAAGCCATCACGGTCACTGCCGCGGCGCCCATCTCTCAGACGCCGCCGCCGCAGCCGTCCCAATCGTCCCAGCACGCTGCCAAGAACGGCAGCCACGCTGGCGCCACCGGCAACGGGAATGGTGCGTCGTCGGAACACGGCGCCAGCTCCGGTGGCATGCAAATGCAGGCGACCAACAAGCCAGAGGACATGATGAAGGAGATGATGATGGAGCAGAGGCAGCAGGCGGTGCCCAGCAGCTACAACAGAACCGACGGCGGCGCGGACAGCGACAACAGGGACGAAGACGATGACTACGACGATGATGATGAAGACGACGACGACGTGGACGCCGACAAAATGCAGTACGAGATCCAGTTTCAGCAGCAGCACCATCACCAGCAACAACAACATCAGAGGCCGAACGCCGGCGGCGGTGGCAACCCGGCTGGCACCGCGGCGCCCGCCAGCACGGCGGCAACGACAACCACCGGATCATTCTTGGGCATGGTCCAGTGA
Protein Sequence:
- >Oropetium_20150105_21620A|Oropetium_thomaeum|Trihelix|Oropetium_20150105_21620A
MAEAPSPISSRPPAQQFDELAAAAGGFDAEGLAAAAAGEEGASGGSAGNRWPRQETLALLKIRQDMDAAFRDATLKGPLWEQVSRKLAEQGYSRSAKKCKEKFENVHKYYKRTKESRAGRNDGKTYRFFTQLEALQATGSHQAPAPAPSPVTSFAPPSTAVGVSGPLPVRAPAEPPPALSGMPTKMGNMSFSTSNTEDYSDEDDSDGEGTQELGADQNSGKRKRVSESGGAATGGSGSGKMMRFFEGLMKQVMERQEAMQQRFLEAIEKREQDRMIREEAWRRQEMARLAREQEILAQERTMAASRDAAVLSFIQKITGQTIPMPSIAAPAINVMPPPPSASPAPPPSSQPPPPPQPPQPSPQPQHKSPTPSTPQQAPPPPHQQKQSSDIVMTPAGETTPHAADTPGYDGGSGGATSSRWPKAEVHALIQLRSKMDMRYQEAGPKGPLWEEISAGMRRLGYNRNAKRCKEKWXXXXXXXXXXXESNKKRPEDSKTCPYFHQLDALYRNKALIGSSSGGAGAAHASSTTTQEAITVTAAAPISQTPPPQPSQSSQHAAKNGSHAGATGNGNGASSEHGASSGGMQMQATNKPEDMMKEMMMEQRQQAVPSSYNRTDGGADSDNXXXXXXXXXXXXXXXXXXADKMQYEIQFQQQHHHQQQQHQRPNAGGGGNPAGTAAPASTAATTTTGSFLGMVQ*