Information report for orange1.1g003766m
Gene Details
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Functional Annotation
- Refseq: XP_006439158.1 — trihelix transcription factor GTL1 isoform X1
- TrEMBL: V4SWV0 — V4SWV0_9ROSI; Uncharacterized protein
- STRING: XP_006439158.1 — (Citrus clementina)
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Fragaria vesca: mrna01828.1-v1.0-hybrid
- Gossypium arboreum: Cotton_A_26259_BGI-A2_v1.0, Cotton_A_17373_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A02G0934, Gh_D12G2385, Gh_D03G0831, Gh_A12G2206
- Juglans regia: WALNUT_00025256-RA
- Malus domestica: MDP0000451038
- Manihot esculenta: Manes.01G001900.1.p, Manes.01G001900.2.p
- Prunus mume: XP_008239287.1
- Prunus persica: Prupe.5G137600.1.p
- Ricinus communis: 30068.m002635
Sequences
CDS Sequence:
- >orange1.1g003766m|Citrus_sinensis|Trihelix|orange1.1g003766m
ATGCAGCAAGGAGGAGGAGGCGGCGGCGATGGTGAAGGTGGAGGTGGAGGTGGAGGCACCCAATCCCAATACGGAGAAATGGCGACGACTAGTACTGCTACTGCTGCAGCGGCAGCCGCTCACATAGACATGGGACAGCAACCAGTAGAAGCTGCTTCACCCATAAGCAGCCGACCACCTGCAAGTGCAAGCAATTTGGATGAACTCATGAGGCTTTCTGGGGGAGATGATGATGAAGGCGATCGAGGTGGAGGTGTTTCCAGCGGCAACAGATGGCCCAGTCAAGAAACATTAGCACTCCTCAAGATTAGGTCTGATATGGATGCCGCCTTCCGTGATGCCACCGTCAAAGGTCCTCTTTGGGAAGATGTCTCCAGGAAACTAGCGGAGCTGGGATACAAGCGGAGTGCCAAGAAATGCAAGGAAAAATTTGAGAATGTTCACAAGTACTATAAGCGAACAAAGGAAGGTAGAGCCGGTCGTCAAGATGGAAAAAGTTACAAATTTTTCACCCAGCTCGAGGCTCTTCATTCATCCCCTACAAGTACTAGTACCAGTACTGCCACCACTAGTAACGTGTCAGCTTCTCTACCAAAGCCCATGACAACTGTCGCTGATACTAGCACTTTAGATGTTGCTCCTGTCTCTGTTGGGATCCCAATGCCCATCTCCTCTTCTGTTCGTATTCCTACTTCACCTATCACTCTTACGTGCTTTCCCTACCACGATCTTAGGTCAACATTAATACCAGCTCCCTCCTCCGCCGTCAATGTTCCTGGATCTGTCACTACACCAGTGCCACCAACAGCTACTACAAGCACCACCCCCGTTGGAATCAGTTTTTCTTCTAAAAGTTCTTCTTCTTCTCCAGAAACTGAGGACGACGACGACGACGTGATGGACTTTGAAGGACAGCCATCCAATACGGCGGGTACCAGCAACCGCGGCCGCAACCGCAAACGAAAGAGACAAACATCCAGCAGCCATAGGATGATGGCGTTCTTTGAGGGTCTGATGAAACAGGTGATGCAAAAGCAGGAGGCCATGCAGCAAAGTTTCTTGGAGGTCATTGAGAAGAGAGAACGAGACAGGATGATAAGAGAAGAGGCTTGGAAGAGGCAAGAGATGTCTAGGCTGGCTCGTGAACACGAGCTTATGGCACAGGAACGGGCCATTTCTGCTTCCAGGGATGCTTCCATTATTAATTTTCTTCAGAAAATTACTGGTCAAACCATACAATTGCCTCCTGCTATAACTATTCCTGCTGCCCCGCCTCCACCTCCACCACAACCACAATCACCATCACAAGCGGTCCCTGTCGCTACAAATACTACACAGTCTCATCATATGCCGCCACCCGAACGCAGAGATATTCAACAACACCATCATCGGCATCAACAAATTCAAAGTAGTGCTGCTGAAGCTGTGACCGCGAGGCATCAGCAACCGAGTGGTACTGTCTCCACATCCATACATTCCCAAGTAGTGATGGCAGTTCCTGAACAACAGGTACCACCATCTGATCATCAGGAGATTGGTAGCGGTGGAAACTTGGAACCAGCCTCGTCGAGATGGCCGAAAGTTGAGGTTCTTGCACTTATAAAGTTAAGGAGTGGACTAGAACACAGGTACCAAGAGGCTGGGCCAAAGGGACCTCTTTGGGAAGAAATATCTGTAGGAATGCAGCGAATGGGCTACAATAGGAATGCCAAGAGATGCAAGGAGAAATGGGAGAACATCAACAAGTATTTCAAGAAGGTTAAAGAAAGTAACAAGAGACGCCCTGAAGATGCCAAAACCTGCCCTTACTTCCACGAGCTTGATGCACTCTACCGGAAAAAGATAATTGGAGTTGGCGGCACCAGCACTAGTAGCCAGAATAGACCAGAAGAACGTCATCAATCCCAATCCGAACAACAGCATCAGCAAGAGAACGTGAACCCAGTAACAAATCCCCAAGAAAGCAGCATTAATGTTTTGCCGGCACCTCTACTGATCACCCAAGCTCATTCTGACTCAGAAAACAAAAATGGTAATGCACAAGCAAGCAATGTCGGTGTAACAGGTAGCCTCTTTGGAGAAGGAAACTTAGGAGCATCCAAAAAGCCAGAAGACATTGTGAAGGAGCTAATGAATCAGCAGGGGACCCAACAAAAACAGCAGCAGCCACAAGCGTCAATAGTGGATGATCAATTTGATAAGGTTGAGGAATCCAACATGGGCAGTGAAAGCGATAATATGGAGTATGAGGAGGAGGATGAAAGGGAGGATGATGAGGAATCAGAAGAAGACAGTAATAAGATGGCTAATTATAAAGTAGAGTTTCAGCGACAGAACACCTCTAATGGGGGAGGAAATGGGGCACCCTCTTTTTTAGCCATGGTTCAGTGA
Protein Sequence:
- >orange1.1g003766m|Citrus_sinensis|Trihelix|orange1.1g003766m
MQQGGGGGGDGEGGGGGGGTQSQYGEMATTSTATAAAAAAHIDMGQQPVEAASPISSRPPASASNLDELMRLSGGDDDEGDRGGGVSSGNRWPSQETLALLKIRSDMDAAFRDATVKGPLWEDVSRKLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKSYKFFTQLEALHSSPTSTSTSTATTSNVSASLPKPMTTVADTSTLDVAPVSVGIPMPISSSVRIPTSPITLTCFPYHDLRSTLIPAPSSAVNVPGSVTTPVPPTATTSTTPVGISFSSKSSSSSPETEDDDDDVMDFEGQPSNTAGTSNRGRNRKRKRQTSSSHRMMAFFEGLMKQVMQKQEAMQQSFLEVIEKRERDRMIREEAWKRQEMSRLAREHELMAQERAISASRDASIINFLQKITGQTIQLPPAITIPAAPPPPPPQPQSPSQAVPVATNTTQSHHMPPPERRDIQQHHHRHQQIQSSAAEAVTARHQQPSGTVSTSIHSQVVMAVPEQQVPPSDHQEIGSGGNLEPASSRWPKVEVLALIKLRSGLEHRYQEAGPKGPLWEEISVGMQRMGYNRNAKRCKEKWENINKYFKKVKESNKRRPEDAKTCPYFHELDALYRKKIIGVGGTSTSSQNRPEERHQSQSEQQHQQENVNPVTNPQESSINVLPAPLLITQAHSDSENKNGNAQASNVGVTGSLFGEGNLGASKKPEDIVKELMNQQGTQQKQQQPQASIVDDQFDKVEESNMGSESDNMEYEEEDEREDDEESEEDSNKMANYKVEFQRQNTSNGGGNGAPSFLAMVQ*