Information report for mrna01828.1-v1.0-hybrid
Gene Details
|
|
Functional Annotation
- Refseq: XP_004309494.1 — PREDICTED: trihelix transcription factor GTL1 isoform X1
- TrEMBL: A0A2H4NFV4 — A0A2H4NFV4_FRAAN; Trihelix transcription factor GT-2F
- STRING: XP_004309494.1 — (Fragaria vesca)
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Citrus sinensis: orange1.1g003766m, orange1.1g005262m, orange1.1g005124m
- Gossypium hirsutum: Gh_A02G0934
- Juglans regia: WALNUT_00025256-RA
- Malus domestica: MDP0000701272
- Manihot esculenta: Manes.01G001900.1.p, Manes.01G001900.2.p
- Prunus mume: XP_008239287.1, XP_008239289.1
- Prunus persica: Prupe.5G137600.1.p, Prupe.5G137600.2.p
- Pyrus bretschneideri: Pbr038634.1
- Ricinus communis: 30068.m002635
- Ziziphus jujuba: XP_015896308.1, XP_015896310.1, XP_015896309.1
Sequences
CDS Sequence:
- >mrna01828.1-v1.0-hybrid|Fragaria_vesca|Trihelix|mrna01828.1-v1.0-hybrid
ATGCAAGGAGGTGGAGGAGGGACGCAATCCCATTACGGAGTTGTAGTTTCTTCAGCTGCTGAAGCAAGTACTGCTGCTGCTCCGTCCATGGCGGCGGAGGCAGCAGACCAAGCGCATGTGGTGGAAGAGGCCTCGCCTATCAGCAGCAGGCCGCCGGCTGGAGGAGCAATCTCCGCCGTCAACTTGGACGAGCTCATGACGCTGTCCGGCGCGGCAGCTGACGTGGCAGCAGATCAAGGCGGTGGTGGCGGTGGAGGGTCCGGCGGGAACAGATGGCCGCGTCAGGAGACACTGGCGCTTCTCAAGATTCGTTCCGAGATGGACGTGGCCTTCCGCGACGCCACTCTCAAAGGTCCCCTATGGGAAGATGTTTCCAGGAAGCTAGCGGAGTTGGGATACAAGAGGAATGCCAAGAAGTGCAAAGAGAAATTCGAGAACGTTCACAAGTATTACAAACGGACCAAAGAAGGCCGCGCCGGAAGGCAAGACGGCAAGAGTTACAAGTTTTTCAGTGAGCTTGAGGCGCTCCACGGCTCCCCCTCCCCCAACGTGTCGGCTTCTCCGCCTGTACACGTCACCACCGCCGCTGCTGCCCCGGTTTCTATTGGCTTCGGATCCATCAGCAACCCCATGCCCATTTCGTCTTTCCGGATGACTGGTGGGAATACTTCTACTGTGCCAATTATGTCCACGCAAGCTACTGGTGCAATTCCTATAATGCCCTCGTCACAGCCACCGCTGCCTGCGAGCACCGCCGCTCCGATGGATATTAATTTCTCATCCAACAGCTCGTCCTCGTCCCATGGCGAGGATGAGGACTACGAGGACGACGATGAGGTGGCGGGAGAGCCGCCGGCGAACACGAGCCGGAAGAGGAAGAGAGGGACGTCGTCGAGAGAGAGCGGTGGGAGCACGAGGAGGATGATGGAGTTTTTCGAGATTCTGATGAAGCAAGTGATGCAGAAGCAAGAGACGATGCAGCAGAGGTTTCTGGAAGTGATTGAGAAGAGAGAGCAGGATCGAAACATAAGGGAAGAAGCTTGGAAGAGGCAAGAGATGGCCAGGCTGACTAGAGAGCACGAGCTCATGACTCAAGAGCGAGCGATTTCAGCTTCCAGAGACGCCGCGATTATCGCATTTCTGCAGAAAATTACCGGCCAGACTATCCAATTGCCTCCGCCGCTAAACGTGCACAATGCTCCTCCGCCGCCAGTGCCGCCGTCTGTGTCGGTCCATGTCACGCCTGTATCAGCACCACCGCCACCTCTAGCGCAACAACAGTCACTACACCAAGTTCATCAGCATCAACCACAGCAGCAGACTCCACCTACTCAAATTTCACGGCATCAAATTCGAACTTCGATCCCTCCAACTCCTAGTGCTAATCAGACGGAGGTAGTTATGGCTGTGCCGGAGCAACAGGTGGCACAGTCGCAGGAGATTGTAGTCGGTAGTGGAGGAGGTTTCGAGGCGACAACCTCATCTTCGAGGTGGCCGAAGGCTGAAGTTCTCGCACTGATAAAGCTGAGGAGCGGATTGGAGACTAGGTATCAAGAGGCTGGGCCGAAAGGGCCACTTTGGGAGGAGATTTCCGCAGGGATGCAGCGAATGGGGTACAAGAGGAATCCCAAGAGGTGCAAAGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAAGTGAAGGAGAGCAACAAGGTTAGGCCGGAAGATGCGAAAACGTGTCCCTATTTTCACGAACTTGATGCACTCTACCGGAAAAGGATACTCGGCGGTGGCCCTAGCGGAGGAAGCAGCAGCTCATTGGGTAATCAGACCGTCCAACAACAGCCACAACAAGCACCGCCGCAGCCGAAATTGGATTCTGCTGCCCAAGGGACAGTGGCAAATACACAACAAACACAAGGAACAGTAGCAGCTACTGATCAATCAGTAAACAAGAGTGGAGATGATAGCCCAAATCTGCAAAAAAATCTATTCGGAGATGCACCTGAAGAGGCAGCCAAGAAGCCAGAAGACATTGTGAAGGAGTTGATGGGGCAACAACAACAACATCATCATCAAGTTCTCAACCAACAAGGGGTACAACAGCAATTAGTAGTAGAAGACTACGATAGAGTCGAGGAAGGTGATAGCGACGTTAATCTCGATCAAGATGAGGAGGAAGACGAAGAGGACGAAGAGGATGAAGAAATGGATGACGAGAGCAGGAAGATGGATTATAAGATAGAGTTTCAGAAGCAACAAAACACAGGCCCTTCATCTAATGGGGGAGGCAATGGGGCACCCTCCTTCTTGGCAATGGTTCAGTGA
Protein Sequence:
- >mrna01828.1-v1.0-hybrid|Fragaria_vesca|Trihelix|mrna01828.1-v1.0-hybrid
MQGGGGGTQSHYGVVVSSAAEASTAAAPSMAAEAADQAHVVEEASPISSRPPAGGAISAVNLDELMTLSGAAADVAADQGGGGGGGSGGNRWPRQETLALLKIRSEMDVAFRDATLKGPLWEDVSRKLAELGYKRNAKKCKEKFENVHKYYKRTKEGRAGRQDGKSYKFFSELEALHGSPSPNVSASPPVHVTTAAAAPVSIGFGSISNPMPISSFRMTGGNTSTVPIMSTQATGAIPIMPSSQPPLPASTAAPMDINFSSNSSSSSHGEDEDYEDDDEVAGEPPANTSRKRKRGTSSRESGGSTRRMMEFFEILMKQVMQKQETMQQRFLEVIEKREQDRNIREEAWKRQEMARLTREHELMTQERAISASRDAAIIAFLQKITGQTIQLPPPLNVHNAPPPPVPPSVSVHVTPVSAPPPPLAQQQSLHQVHQHQPQQQTPPTQISRHQIRTSIPPTPSANQTEVVMAVPEQQVAQSQEIVVGSGGGFEATTSSSRWPKAEVLALIKLRSGLETRYQEAGPKGPLWEEISAGMQRMGYKRNPKRCKEKWENINKYFKKVKESNKVRPEDAKTCPYFHELDALYRKRILGGGPSGGSSSSLGNQTVQQQPQQAPPQPKLDSAAQGTVANTQQTQGTVAATDQSVNKSGDDSPNLQKNLFGDAPEEAAKKPEDIVKELMGQQQQHHHQVLNQQGVQQQLVVEDYDRVEEGDSDVNLDQDEEEDEEDEEDEEMDDESRKMDYKIEFQKQQNTGPSSNGGGNGAPSFLAMVQ*