Information report for Lus10029778
Gene Details
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Functional Annotation
- Refseq: XP_006473053.1 — trihelix transcription factor GT-2
- TrEMBL: A0A067H7R9 — A0A067H7R9_CITSI; Uncharacterized protein
- STRING: Lus10029778 — (Linum usitatissimum)
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Cicer arietinum: XP_004496473.1
- Citrullus lanatus: Cla001964
- Citrus sinensis: orange1.1g006925m, orange1.1g006924m
- Daucus carota: DCAR_001133
- Fragaria vesca: mrna08175.1-v1.0-hybrid
- Glycine max: Glyma.20G166600.1.p, Glyma.02G082100.2.p, Glyma.02G082100.1.p
- Gossypium arboreum: Cotton_A_12729_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A05G2066
- Juglans regia: WALNUT_00024662-RA, WALNUT_00012588-RA
- Manihot esculenta: Manes.02G179100.1.p
- Medicago truncatula: Medtr1g098900.1
- Nicotiana benthamiana: Niben101Scf02361g07001.1
- Solanum lycopersicum: Solyc12g056510.1.1
Sequences
CDS Sequence:
- >Lus10029778|Linum_usitatissimum|Trihelix|Lus10029778
ATGCTCTGNNNNNNNNNNNCTAGTGTTGCCTCTTCCGTTAATCCAGGCGGTGATACTGCTCAACACCACCACCATAACCAGTATCAACCGCATCACAATCCCAATCCTCCACCGACTTCTTCTTCTTCTTCTGCTGCTGCTGCTGCTGCTGGAATTGTCGGCGGATTTGTTCAGGAAGGAGCTGGCGAAGCTGGAGGAGGAGGCGGTCGCGGTGGCGGCGCCGGACATGTTGGATCGAGTTCCGGCGGCGAGGAAGATAGGTTCGGCAGCGGCGACCGGAGCTTCGGGGGAAACCGGTGGCCTCGGCAGGGAACTTTGGCGTTGCTGAAAATTAGGACGGATATGGACGCCACGTTTCGCGATGCTAGTGTCAAAGGACCTCTGTGGGACGACGTCTCCAGGAAGATGGGAGAGCTTGGGTATCATCGAAGTGCCAAAAAATGCAAAGAGAAGTTTGAGAATGTGTACAAGTATCACAAGCGAACCAAAGATGGCCGCGTTGGCAAACACGAAGGCAAAACTTATCGCTACTTTGAACAACTTGAAGCCTTCGAGACCCACCCACCCGGCGGTGCTCCACCACCTCCTCCTCCGCAACTGCAAATGCAGCAAGTTATCCATCCTTCTAATCCGCCACAAACTTTACCGGCCACCGTTGTTACTCCTCACAATACTACTGTTCCATCGACAACTGTCGCAACAGCTGCTTCCATTATAGCCCCTCCGCCGGCCGCAATTAACATCACTACAACTGCTGTTCCTCAACTGACGAGTTTTCCGGTGTATCATCCTCCATCATTCTCCACATTCTCCGCCGCAGATCTGATGTCGAATTCGACCTCCTCCGCGTCGACGTCGTCGGACGTGGAGATCCACGGCAGACACAGACGGAAGAGGAAGTGGAAGGACTTCTTCGGGCGGCTGATGACGGAGGTTGTTCAGAAGCAGGAGGAGATGCAAAGGAAGTTTCTGGAAGCAATAGAGAAGCGAGAGCAGGAGCGTTTGGCTAGAGAAGAGTCTTGGCGACACCAAGAGATGTCTCGTATAAATAGGGAGCGGGAGATACTAGCTGAGGAGAGATCCATCGCCGCCGCTAAGGACGCCGCAGTAATGTCCTTCCTCCAGAAACTCTCCGATCAGCAGGCCCCTGGGGCACCGCCGCTGCAGCTTCCTCAATCCATAGCTCAAACCACTCCTCCTCCGCCGCCACCAATAACACCGCAGCCACCAACAACCACAGCACCACCGCCAGCTTCAGTATCAGCTCCGCCGCCGCAATCACAATCGGCGCCGAATCCAGTACAGGCGGCGCCGTCGCCGGCACCATCGATGATGACGCCCTCACCAGCTCATCAACATCATCACATACTGCAACAATCGGGGAGTCAACTTCAAATGACGACAGGTATGAGTAGAATGGATAGTGAAGCGGACCGGAATTTTCTGCCGGCGAGCTCGTCTCGATGGCCGAAAGTGGAAGTGGAAGCTCTGATATCACTAAGGACGAATCTGGACTCCAAGTACGAAGAGAACGGTCCGAAAGGCCCTTTGTGGGAGGACATATCGGCAGGGATGAAGAGATTGGGATACAACCGGAGCTCAAAGAGATGTAAAGAGAAATGGGAGAATATCAACAAGTACTTCAAGAAAGTGAAGGAGAGCAATCGGAAGCGCCCAGAAGATTCCAAGACTTGTCCGTATTTTCACCAGCTGGATGTTCTTTACAGGCAGAAGTTGGAAGGAGGAGGCGGAGGTTCTACGTCGATGACGGCACCGAATTCAGGTTCGGGTCAGCAGCAGCTCCCGACGAGGCCAGAGATGAATTCGGTTCCTCTGATGGTTCAGCCGGAGCAACAATGGCCGCCGCAGCCTCCACCTCCGGCAGCTCCTTATAATCAGGAGCACCCCCGGGGTCCGGTGACGCAGGATATGGACAGCGAGGATCACGACGATGAGGAAGAAGACTATGACGATGAGGATGACGACGAGGGAGGTGGAGGAGGATACGAACTGGTACCGAATAAGCCAACGTAG
Protein Sequence:
- >Lus10029778|Linum_usitatissimum|Trihelix|Lus10029778
MLXXXXXSVASSVNPGGDTAQHHHHNQYQPHHNPNPPPTSSSSSAAAAAAGIVGGFVQEGAGEAGGGGGRGGGAGHVGSSSGGEEDRFGSGDRSFGGNRWPRQGTLALLKIRTDMDATFRDASVKGPLWDDVSRKMGELGYHRSAKKCKEKFENVYKYHKRTKDGRVGKHEGKTYRYFEQLEAFETHPPGGAPPPPPPQLQMQQVIHPSNPPQTLPATVVTPHNTTVPSTTVATAASIIAPPPAAINITTTAVPQLTSFPVYHPPSFSTFSAADLMSNSTSSASTSSDVEIHGRHRRKRKWKDFFGRLMTEVVQKQEEMQRKFLEAIEKREQERLAREESWRHQEMSRINREREILAEERSIAAAKDAAVMSFLQKLSDQQAPGAPPLQLPQSIAQTTPPPPPPITPQPPTTTAPPPASVSAPPPQSQSAPNPVQAAPSPAPSMMTPSPAHQHHHILQQSGSQLQMTTGMSRMDSEADRNFLPASSSRWPKVEVEALISLRTNLDSKYEENGPKGPLWEDISAGMKRLGYNRSSKRCKEKWENINKYFKKVKESNRKRPEDSKTCPYFHQLDVLYRQKLEGGGGGSTSMTAPNSGSGQQQLPTRPEMNSVPLMVQPEQQWPPQPPPPAAPYNQEHPRGPVTQDMDSEDHDDEEEDYDDEDDDEGGGGGYELVPNKPT*