Information report for Lus10018887
Gene Details
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Functional Annotation
- Refseq: XP_018851634.1 — PREDICTED: trihelix transcription factor GT-2-like
- Swissprot: Q39117 — TGT2_ARATH; Trihelix transcription factor GT-2
- TrEMBL: A0A2I4H660 — A0A2I4H660_JUGRE; trihelix transcription factor GT-2-like
- STRING: Lus10018887 — (Linum usitatissimum)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Cajanus cajan: C.cajan_43791
- Cicer arietinum: XP_004496473.1
- Citrus sinensis: orange1.1g006925m, orange1.1g006924m
- Daucus carota: DCAR_001133
- Fragaria vesca: mrna08175.1-v1.0-hybrid
- Gossypium hirsutum: Gh_D05G2306, Gh_A05G2066
- Juglans regia: WALNUT_00024662-RA, WALNUT_00012588-RA
- Lotus japonicus: Lj0g3v0303659.1
- Manihot esculenta: Manes.18G091600.1.p, Manes.02G179100.1.p
- Medicago truncatula: Medtr1g098900.1
- Populus trichocarpa: Potri.005G191900.1
- Prunus persica: Prupe.8G028700.1.p
- Ricinus communis: 29576.m000223
Sequences
CDS Sequence:
- >Lus10018887|Linum_usitatissimum|Trihelix|Lus10018887
ATGCTAGTGGACTCCGCTACTGACGGAGGCGGCGGCGGCGCCGAAAGGACCCGCACCGCGCCCCTCGCCGCCCCCCCCCCCCCCCCCGCCACTCCTCCTCACTTCCACCAGCACCAGCACCAGCACCAGCACCAGCACCAGCAGCATCAATTATCGAGTAATCCTCCGATTAATTCATCAGCAGCTCAGTTTTCAGCTCCGGCGGCGGCTGATGCTGGACAGCATGTCGGCTCGAGCTCAGGCGGCGAGGAAGACAGATTCGGCGGTGGAAGCGGCGGGAATCGGTGGCCGCGGCAGGAGACGGTGGCTCTGCTTCGGATAAGGACGGATATGGACGCGACGTTTCGGGACGCCAGTGTGAAAGGACCTCTCTGGGATGACGTTTCCAGGAAAATGGCGGAGCTTGGATACCATCGAAGCTCGAAGAAATGCAAAGAGAAATTTGAGAACGTTTACAAGTACCACAAACGGACTAAAGACGGCCGCACCGCCAAACACGACGGCAAAACCTACCGTTTCTTCCAAGAGCTCGAAGCCTTCGACAGCCATCTCTCCCCGCCCGGAGCTCCTCCAGCGCCGACGCAGCAGCACAAGCAGCCGGGCATCCAGTTACAAATTCCAGCAGTAAATCCAACTCCTCTGCCTCCTCCGACAACTGTTCCATCGACAGCAGCCGTCCTCCCGCCGCATACTCCGTCCGCGATCAACACCGCCACCCCCGCAACCACCACACCGGCAGCAGTGGCAACTTCGCTTCCTCCTCAATCGACGAACCAGCAGCAGCATCAGAATCCGCCGTCGTTTTCAGATCTGATGTCGAATTCGAACTCGACATCGTCGTCGACCTCAACTTCGTCGGAGGCGGAGATCCACGGAGGCGGCAGGAGCAAGAGGAAGCGGAAGTGGCAGGACTTGTTCGAGCGGCTGATGACGGAGGTGGTGAATAAGCAGGAGGAGATGCAGAGGAAGTTTCTGGAAGCAATCGAGAAGCGGGAGAAGGAGCGGATCTCTACAGAAGAGTACTGGAGAAACCAGGAGATGGCTCGGATCAATCGAGAACGAGAGATCCTAGCTCAGGAGAGATCCATCGCCGCCTCTAAAGACGCCGCCGTCATGTCCTTCCTCCAGAAGATCTCCGATCAGCACCAGATCCCGATCCCGATCGCCGTCTCCGCGCCTCCTCCTGCTCCGCCGCCGCAGCAGCCACCGCCTGTTCAGCTTCCTCAAGTCATCCAAGCCAATACTCCTCCACCACCGCCGCCGCAGCCTCAGCAGCCTCCACTGCCTCCGTCTACAACGACAACGACATCATTAGCTCCTCTGCCACTGCAATTAACGGCAGAAACAGAGCATCAAGTACGGAATCAACCTCAATCAGAGAGTGTGAGCTCGTCTCGATGGCCGAAGGTCGAAATCGAAGCGCTGATCGATCTGAGGAAGAATCTGGACTCGAAGTATCAAGAGAACGGCCCCAAGGGGCCGTTGTGGGAGGAGATATCGGCGAGGATGAAGAGAATCGGTTACAACAAGAGCGCCAAGAGGTGCAAGGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAGGTGAAGGAGAGCAACAAGAAGCGGCCCGAGGATTCAAAAACGTGTCCGTATTTCCACCAATTGGATGCATTGTACAGGGAGAGACAGAGCAATTCGGTCCCGATCCTCGTCCAGCCCGAGCAACAATGGCCTCCACAACCACAAGTTGATGCGGCTGCTTCGCAACCGACCCCACCACCGCTGCATCCGATCCATCAGCAGCACAGACCGGATGCGGCGATGGAGGATATGGAGAGCGAGGACGATGAGGAAGATGATGATGAAGAGGAAGGCGACGATGATCATGATGGTGGTGGTGGTTACGAACTCGTCTCGAATAAGGCGACATCGATGAACATGTGA
Protein Sequence:
- >Lus10018887|Linum_usitatissimum|Trihelix|Lus10018887
MLVDSATDGGGGGAERTRTAPLAAPPPPPATPPHFHQHQHQHQHQHQQHQLSSNPPINSSAAQFSAPAAADAGQHVGSSSGGEEDRFGGGSGGNRWPRQETVALLRIRTDMDATFRDASVKGPLWDDVSRKMAELGYHRSSKKCKEKFENVYKYHKRTKDGRTAKHDGKTYRFFQELEAFDSHLSPPGAPPAPTQQHKQPGIQLQIPAVNPTPLPPPTTVPSTAAVLPPHTPSAINTATPATTTPAAVATSLPPQSTNQQQHQNPPSFSDLMSNSNSTSSSTSTSSEAEIHGGGRSKRKRKWQDLFERLMTEVVNKQEEMQRKFLEAIEKREKERISTEEYWRNQEMARINREREILAQERSIAASKDAAVMSFLQKISDQHQIPIPIAVSAPPPAPPPQQPPPVQLPQVIQANTPPPPPPQPQQPPLPPSTTTTTSLAPLPLQLTAETEHQVRNQPQSESVSSSRWPKVEIEALIDLRKNLDSKYQENGPKGPLWEEISARMKRIGYNKSAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYRERQSNSVPILVQPEQQWPPQPQVDAAASQPTPPPLHPIHQQHRPDAAMEDMESEDDEEDDDEEEGDDDHDGGGGYELVSNKATSMNM*