Information report for XP_010923867.1
Gene Details
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Functional Annotation
- Refseq: XP_010923867.1 — transcription factor MYB97
- TrEMBL: A0A2H3Z4W0 — A0A2H3Z4W0_PHODC; LOW QUALITY PROTEIN: transcription factor MYB97
- STRING: XP_008808424.1 — (Phoenix dactylifera)
- GO:0005634 — Cellular Component — nucleus
- GO:0090406 — Cellular Component — pollen tube
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain.The first MYB gene identified was the ‘oncogene’ v-Myb derived from the avian myeloblastosis virus . Evidence obtained from sequence comparisons indicates that v-Myb may have originated from a vertebrate gene, which mutated once it became part of the virus. Many vertebrates contain three genes related to v-Myb c-Myb, A-Myb and B-Myb and other similar genes have been identified in insects, plants, fungi and slime moulds. The encoded proteins are crucial to the control of proliferation and differentiation in a number of cell types, and share the conserved MYB DNA-binding domain. This domain generally comprises up to three imperfect repeats, each forming a helix-turn-helix structure of about 53 amino acids. Three regularly spaced tryptophan residues, which form a tryptophan cluster in the three-dimensional helix-turn-helix structure, are characteristic of a MYB repeat. The three repeats in c-Myb are referred to as R1, R2 and R3; and repeats from other MYB proteins are categorised according to their similarity to either R1, R2 or R3.
- In contrast to animals, plants contain a MYB-protein subfamily that is characterised by the R2R3-type MYB domain. MYB proteins can be classified into three subfamilies depending on the number of adjacent repeats in the MYB domain (one, two or three). We refer to MYB-like proteins with one repeat as ‘MYB1R factors’, with two as ‘R2R3-type MYB’ factors, and with three repeats as ‘MYB3R’ factors.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT4G26930.1
- Citrus sinensis: orange1.1g039708m, orange1.1g011938m
- Cucumis melo: MELO3C018820P1
- Cucumis sativus: Cucsa.148580.1
- Malus domestica: MDP0000308617, MDP0000179306
- Musa acuminata: GSMUA_Achr4P23690_001
- Nicotiana benthamiana: Niben101Scf03723g03002.1
- Ricinus communis: 29686.m000890
- Setaria italica: Seita.4G261400.1.p
- Setaria viridis: Sevir.4G274300.1.p
- Vitis vinifera: GSVIVT01030434001, GSVIVT01037667001
- Ziziphus jujuba: XP_015881129.1
Sequences
CDS Sequence:
- >XP_010923867.1|Elaeis_guineensis|MYB|XP_010923867.1
ATGAAGAGCGGAGGAGGGGCGGAGGAGTCATCGGCGGCGGCGCTGAAGAAGGGGCCGTGGACGGCGGCGGAGGACGCGATCCTGATGGAGTACGTGAAGAAGCACGGGGAGGGTAATTGGAACGCGGTGCAGAAGAACAGCGGCCTTAACCGCTGCGGCAAGAGCTGCCGCCTCCGGTGGGCCAACCACCTCCGCCCCGACCTCAAGAAGGGCACCTTCACTCGCGAGGAGGAGCTTCTCATCCTCCACCTCCATGCTCAGCTCGGCAACAAGTGGGCTCGCATGGCCGCCCAATTACCGGGGAGGACGGACAATGAGATCAAGAACTACTGGAACACGCGGATCAAGCGGCGGAAGCGTGCGGGGCTGCCTCTGTACCCGCCGGAGATCCAGCGGCAGGTTTTACTCCGGCACGGCTACCACCTCCGCCCTACCGCCGCCTCCTCTTCCGCCTCTCCTGGTCCTCCGGCGCCACTGCCCGCTTCCGTTCCCCGCGCCCGGCTCCGCCCTCCGCCGCTCTCATTGATGCACCCGATCAGTTTCCCGTCGTCTCCTTCTCCGACGGCGGCGTTCTCGCCCTCTCCCTCCGCAACCGCGCCCATCCCTGTCGTTGCTCAGAATCAATTCTCGAGCGGCCTTCCTTCCCAGTTCCCGCTCTCCTCCCCTGTCCTGTCTCCTGCTTCTCCCCTGTTTCAATCTCAGCAACAACAGCAGCTGCAGTTTTCTGTTTCCTGCCCTGTTTCGCCGACTCCGCCGAGCCCTCTTTTTCAGTTGCAGCAGCCGATGCACTGCAATTTGGGGAGTTTCGATGTCAATCCATCTCCTTCTTCGGCGCAGATGCCCTTCACGGGTGAGCTCCCTTCAAGCCAAATACTGGGGGAGACGGGCGGCGGCTGCGGCGGTGGTGCCATCGGGCTGCTCCGGTCGAGCAGCACTGGGCTTCTGGACGACATGATACGGGAGCTGCAGCGTGATGTGGACATTCCGAGGGTGGACCTGCAGCCTCAGCCGCCGGCGGCCGCCGCAGTAGAGGGTGGGGATGGCCACCCTGGTGGTAACGAGGTCAGCAAAGATGGCACCTTTTCGCCCGTTCAGGGCTCGGTTCAGGAATCTCTGAGCAAGTTGGACGGCTCCGACTCTTCCATTAATGGAACTGAGATGAGGAGCAAAGCAACAAATGAGATCAGCGGTGTGCATGACGACATATCCATGCTGTTAGATGCGATACCGGCTCCCACAATGCCTGCAACAATGGTGGCCCCTGACTGGTACAATAGCGACAGCGGAGAAATCTCCAATGGTCCATCATCCGTCATGACCGATGACGACATTGGGCTTGAAATGCATCAGTTGGCTTCATCCCTTTCTATCGCTCCTGTGGACCAGGAATGGAACCTCAGCTCATGA
Protein Sequence:
- >XP_010923867.1|Elaeis_guineensis|MYB|XP_010923867.1
MKSGGGAEESSAAALKKGPWTAAEDAILMEYVKKHGEGNWNAVQKNSGLNRCGKSCRLRWANHLRPDLKKGTFTREEELLILHLHAQLGNKWARMAAQLPGRTDNEIKNYWNTRIKRRKRAGLPLYPPEIQRQVLLRHGYHLRPTAASSSASPGPPAPLPASVPRARLRPPPLSLMHPISFPSSPSPTAAFSPSPSATAPIPVVAQNQFSSGLPSQFPLSSPVLSPASPLFQSQQQQQLQFSVSCPVSPTPPSPLFQLQQPMHCNLGSFDVNPSPSSAQMPFTGELPSSQILGETGGGCGGGAIGLLRSSSTGLLDDMIRELQRDVDIPRVDLQPQPPAAAAVEGGDGHPGGNEVSKDGTFSPVQGSVQESLSKLDGSDSSINGTEMRSKATNEISGVHDDISMLLDAIPAPTMPATMVAPDWYNSDSGEISNGPSSVMTDDDIGLEMHQLASSLSIAPVDQEWNLSS