Information report for XP_009803272.1
Gene Details
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Functional Annotation
- Refseq: XP_009803272.1 — PREDICTED: putative uncharacterized protein FLJ22184
- Refseq: XP_016444409.1 — PREDICTED: protein indeterminate-domain 2-like
- Swissprot: Q9LVQ7 — IDD1_ARATH; Zinc finger protein ENHYDROUS
- TrEMBL: A0A1S3XX08 — A0A1S3XX08_TOBAC; protein indeterminate-domain 2-like
- TrEMBL: A0A1U7YGN5 — A0A1U7YGN5_NICSY; Uncharacterized protein
- STRING: XP_009803272.1 — (Nicotiana sylvestris)
- GO:0009937 — Biological Process — regulation of gibberellic acid mediated signaling pathway
- GO:0010029 — Biological Process — regulation of seed germination
- GO:0010431 — Biological Process — seed maturation
- GO:0005634 — Cellular Component — nucleus
- GO:0044212 — Molecular Function — transcription regulatory region DNA binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: Achn254561
- Capsicum annuum: CA02g22920
- Manihot esculenta: Manes.S010100.1.p
- Nicotiana benthamiana: Niben101Scf03693g07009.1, Niben101Scf03072g05002.1
- Nicotiana tabacum: XP_016444409.1, XP_016471017.1
- Petunia inflata: Peinf101Scf01427g00012.1
- Populus trichocarpa: Potri.005G125600.1, Potri.007G028800.3, Potri.007G028800.2, Potri.007G028800.1
- Prunus persica: Prupe.7G151500.1.p
- Solanum lycopersicum: Solyc02g085580.2.1
- Solanum melongena: Sme2.5_00099.1_g00004.1
- Solanum tuberosum: PGSC0003DMP400022483, PGSC0003DMP400027161
- Vitis vinifera: GSVIVT01019000001
Sequences
CDS Sequence:
- >XP_009803272.1|Nicotiana_sylvestris|C2H2|XP_009803272.1
ATGCCGGCCGACCCAGATAACTCATCCGCCATGAACGATTCAACAGGCTCAGGTGAAGTAAGTGTTTCTTCTTCAGGTAATCAAGTTCCTCCACAGAAAGAATCAGCTAAGAAAAAGAGAAATCTTCCTGGGATGCCAGATCCCGATGCAGAGGTTATTGCTTTGTCACCTAAAACTCTACTAGCGACGAACAGATTTGTTTGTGAAATTTGCAGTAAAGGGTTTCAAAGGGACCAGAATTTGCAGCTTCATAGAAGGGGTCATAATTTGCCATGGAAGCTAAGGCAGAGATCAAGCCAAGAGGTGAAGAAGAGAGTTTATGTTTGCCCTGAAACCACTTGTGTTCACCACGATCCTTCACGGGCATTGGGTGATTTGACCGGAATTAAGAAACATTTCTGCCGTAAACATGGTGAGAAGAAGTGGAAATGTGATAAGTGTTCTAAGAAATATGCAGTTCAGTCTGATTTAAAAGCTCATTCTAAGATTTGTGGTACTAGAGAATATAAATGTGATTGTGGCACTTTATTTTCAAGGAGGGATAGCTTTATCACACATAGGGCTTTTTGTGATGTATTAGCTCAAGAGAGTGCAAAAGCAGTACCAGAGAAACCTCCTAATGTTACTAATGAGGAACCTAAGACACAAGCTATTGCTGCTTCATCATCACCACCACCACCTACACCGATGGCGTCTCCACCTGCCGCCGAGTCTCAACCACTACCACCAGCTCTTCCTCCGCCTGCAGCTCCAACGACTTTAACCCCTGCTGCTATTCCTCCGTCAACTACCGTGATATCATTTGTTTCCTCTGTTCAGAATCCAGAGTTGCGGGAGAATCCGAACCCAAATTCTACTGGAACTGCTGGCAAACAGGTTATGGAGGAAACAACAGCTTTAGCAAGCTTGACTGGAAGTTGTAGCAGCAGTAGTAGCTCTTGTAGTAATGGAAGTACTAGCAGTAATGTTTTTGGAAGCTTGTTTGCTTCATCAACAGCTTCAGGAAGTATGCCATCTCAAGCTCCTGGATTCACTGACTTGTTTCGAGCTGTGGCTCCTGAACGCGTACCTGAGATGGCACCACCTTCATCTGCAGAACCAATATCTCTCTGCCTAGCAATGAGTCACGGTTCATCAATATTTAGACCAGCTGGACAAGAGCGGAGGCAATATGCTCCAGTACCACAACCGGCCATGTCTGCAACAGCATTACTGCAGAAGGCAGCTCAGATGGGTGCAGCAGCAACCAGCTCATCATTGTTGAGGGGCCTTGGGGTTATGTCCTCCTCATCCCCTTCTAATGGACAACAAGAATGGAGTGGTAGACCAATGGAAACCAATGGTGCATCATTGGCTGCAGGCCTTGGGCTTGGACTACCCTGTGATGCTGGTTCTGGTCTAAAGGAATTAATGTTGGGAACTCCCTCTGTTTTTGGTCCCAAGCATCCTACTCTTGACCTTCTTGGATTAGGGATGGCTGCTAGTGGCGGTCCATCGCCTGGATTGTCGGCTCTACTAACATCCATGGGTAGTAATCTAGACATGGCAACTGCAGCAGGATCTTTTGGTAGTGGAGATTTCAGTGGGAAAGATTTAGGAAGAAATTCATGA
Protein Sequence:
- >XP_009803272.1|Nicotiana_sylvestris|C2H2|XP_009803272.1
MPADPDNSSAMNDSTGSGEVSVSSSGNQVPPQKESAKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLRQRSSQEVKKRVYVCPETTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDLKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDVLAQESAKAVPEKPPNVTNEEPKTQAIAASSSPPPPTPMASPPAAESQPLPPALPPPAAPTTLTPAAIPPSTTVISFVSSVQNPELRENPNPNSTGTAGKQVMEETTALASLTGSCSSSSSSCSNGSTSSNVFGSLFASSTASGSMPSQAPGFTDLFRAVAPERVPEMAPPSSAEPISLCLAMSHGSSIFRPAGQERRQYAPVPQPAMSATALLQKAAQMGAAATSSSLLRGLGVMSSSSPSNGQQEWSGRPMETNGASLAAGLGLGLPCDAGSGLKELMLGTPSVFGPKHPTLDLLGLGMAASGGPSPGLSALLTSMGSNLDMATAAGSFGSGDFSGKDLGRNS