Information report for CA02g22920
Gene Details
|
|
Functional Annotation
- Refseq: XP_016560587.1 — PREDICTED: protein indeterminate-domain 1-like
- Swissprot: Q9LVQ7 — IDD1_ARATH; Zinc finger protein ENHYDROUS
- TrEMBL: A0A1U8FMZ6 — A0A1U8FMZ6_CAPAN; Protein indeterminate-domain 1
- TrEMBL: A0A2G3AAD8 — A0A2G3AAD8_CAPAN; protein indeterminate-domain 1-like
- STRING: PGSC0003DMT400033039 — (Solanum tuberosum)
- GO:0009937 — Biological Process — regulation of gibberellic acid mediated signaling pathway
- GO:0010029 — Biological Process — regulation of seed germination
- GO:0010431 — Biological Process — seed maturation
- GO:0005634 — Cellular Component — nucleus
- GO:0044212 — Molecular Function — transcription regulatory region DNA binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Cajanus cajan: C.cajan_12651
- Gossypium hirsutum: Gh_D11G1873
- Malus domestica: MDP0000233477
- Manihot esculenta: Manes.S010100.1.p
- Nicotiana benthamiana: Niben101Scf03693g07009.1, Niben101Scf03072g05002.1
- Nicotiana tabacum: XP_016444409.1, XP_016471017.1
- Petunia inflata: Peinf101Scf01427g00012.1
- Populus trichocarpa: Potri.007G028800.3, Potri.007G028800.2, Potri.007G028800.1
- Prunus mume: XP_008241644.1
- Prunus persica: Prupe.7G151500.1.p
- Solanum lycopersicum: Solyc02g085580.2.1
- Solanum melongena: Sme2.5_00099.1_g00004.1
- Solanum tuberosum: PGSC0003DMP400022483, PGSC0003DMP400027161
- Vitis vinifera: GSVIVT01019000001
Sequences
CDS Sequence:
- >CA02g22920|Capsicum_annuum|C2H2|CA02g22920
ATGCCGGCTGACCCAGATAATTCATCCGCCATGAATGATTCTACTGGTTCAGGTGAAGCAAGTGTTTCTTCTTCAGGTAATCAAGTAGTTCCACAGAAAGAATTAGTCAAGAAAAAACGAAATCTCCCTGGGATGCCAGATCCCGATGCAGAGGTGATTGCTTTGTCACCAAAGACTTTGCTGGCGACGAACAGATTTGTATGTGAAATTTGCAGTAAAGGGTTTCAAAGAGACCAGAATTTGCAGCTTCATAGAAGGGGTCATAATTTGCCATGGAAGTTGAGGCAGAGAACAAGCAAAGAGGTGAAGAAGAGAGTATATGTTTGCCCTGAACCTTCTTGTGTTCACCATCATCCTTCAAGGGCATTGGGTGATTTGACTGGAATCAAGAAACATTTCTGTCGTAAACATGGTGAAAAGAAGTGGAAATGTGATAAGTGTTCCAAGAAATATGCTGTTCAGTCTGATTTAAAGGCTCATTCAAAGATTTGTGGAACTAGAGAGTATAAATGTGATTGTGGAACTCTATTTTCAAGGAGGGATAGCTTTATCACCCACAGGGCATTTTGTGATGCATTAGCTCAAGAAAGTGCTAAAACACTGCCAGAAAAACCTCCTAATGCTAATGAGGAGCCTAAGACAACAGCAGTTGCTTCACCATCGCCACCACCACCACCACCACCACCACCGGCGCCTGCACCTGCCACCGAGTCTCAACCACCACCACCAGAAGCAGCTCTTCCTCCTGCAGCAGCTCCAAAGCCTTTAATCACCCCGGCAGTTCCTCCGTCAAGTGCCGTAATGTCATTTATTTCCTCTGTTCAGAATCCAGTTGCTAAAATTTCTGCAGATTTGCTGGAGAATCCGAACACAAATCCTGCCGGGACTGCTACGAAACAGATTCTGGAGGAAACAACAGCGGTAGCAAGCTTGACTGGAAGCTGTAGCAGCTCTTGTAGTAATGGAAGTACTAGCAGCAGTGTCTTCGGAAGCTTGTTTGCTTCATCAACAGCTTCGGGAAGTTTGCCATCTCAAGCTCCTGGTTTTGCTGTTATGTTTCGAGCCATGCCTCCTGACCACACTCTTGAGATGGCATCACCTTCATCTACAGAACCAATTTCTCTCGGCCTAGCAATGAACCACAGTTCATCAATTTTTAGACCAGCTGGGCAAGAAAGGAGGCAATATGCTCCTGCACCACAGCCAGCCATGTCCGCAACAGCATTACTGCAGAAGGCAGCTCAGATGGGTGCAGCAGCAACCAGCTCTTCGTTGTTGAGGGGCTTTGGGGTTATGTCCTCCACATCATCTTCCAACGGGCAGCATGAATGGAGTGGGAGACCAATTGATGCCAATGGTGCATCATTGTCTGCAGGCCTTGGTCTTGGGCTGCCTTGTGACGCGGGTTCTGGTCTGAAGGAATTAATGATGGGAACTCCCTCCGTCTTTGGTCCTAAACATCCTACTCTTGACCTTCTTGGATTGGGAATGGCGGCAAGTGTCGGTCCAACGCCTGGATTATCTGCCCTAATAACATCCATGGGTAGTAACATGGACATGGTGACTTCAGCTGGAGCTTTTGGTAGTGGAGATTTCAGTGGGAAAGACTTGGGAAGAAATTCCTGA
Protein Sequence:
- >CA02g22920|Capsicum_annuum|C2H2|CA02g22920
MPADPDNSSAMNDSTGSGEASVSSSGNQVVPQKELVKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKRVYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDLKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAQESAKTLPEKPPNANEEPKTTAVASPSPPPPPPPPPAPAPATESQPPPPEAALPPAAAPKPLITPAVPPSSAVMSFISSVQNPVAKISADLLENPNTNPAGTATKQILEETTAVASLTGSCSSSCSNGSTSSSVFGSLFASSTASGSLPSQAPGFAVMFRAMPPDHTLEMASPSSTEPISLGLAMNHSSSIFRPAGQERRQYAPAPQPAMSATALLQKAAQMGAAATSSSLLRGFGVMSSTSSSNGQHEWSGRPIDANGASLSAGLGLGLPCDAGSGLKELMMGTPSVFGPKHPTLDLLGLGMAASVGPTPGLSALITSMGSNMDMVTSAGAFGSGDFSGKDLGRNS*