Information report for XP_009774629.1
Gene Details
|
|
Functional Annotation
- Refseq: XP_009774627.1 — PREDICTED: zinc finger protein NUTCRACKER-like
- Refseq: XP_009774629.1 — PREDICTED: zinc finger protein NUTCRACKER-like
- Refseq: XP_016433584.1 — PREDICTED: protein indeterminate-domain 7-like
- Refseq: XP_016433590.1 — PREDICTED: protein indeterminate-domain 7-like
- Swissprot: Q8H1F5 — IDD7_ARATH; Protein indeterminate-domain 7
- TrEMBL: A0A1S3X0Y7 — A0A1S3X0Y7_TOBAC; protein indeterminate-domain 7-like
- TrEMBL: A0A1U7W3K5 — A0A1U7W3K5_NICSY; zinc finger protein NUTCRACKER-like
- STRING: XP_009774627.1 — (Nicotiana sylvestris)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Capsicum annuum: CA03g36390
- Nicotiana benthamiana: Niben101Scf02078g08043.1, Niben101Scf02831g07012.1, Niben101Scf38401g00004.1
- Nicotiana tabacum: XP_016433590.1, XP_016433584.1, XP_016479410.1, XP_016479409.1, XP_016500153.1, XP_016500154.1, XP_016448767.1
- Petunia inflata: Peinf101Scf06241g00003.1
- Populus trichocarpa: Potri.003G040100.1
- Solanum lycopersicum: Solyc03g121660.2.1
- Solanum melongena: Sme2.5_00007.1_g00011.1
- Solanum tuberosum: PGSC0003DMP400004413, PGSC0003DMP400004412, PGSC0003DMP400004411
Sequences
CDS Sequence:
- >XP_009774629.1|Nicotiana_sylvestris|C2H2|XP_009774629.1
ATGATAAAAGGTTTTATGAATCAACAAAATCAACCTGTTGTGGTAGAGGAAAACATGTCCAATTTAACATCTGCATCTGGTGAAGCAGCAAGTGTATCTTCTTGCAATCGAAATGATAATAATAATAATAATACTATTACGGGAGGAATCTATCCCCCTCAGTATAACTTTGCTCCTCCAAATCAACAAGTTCAGGCTCAACATCAAATCAAGAAAAAGAGAAACCAACCAGGCAATCCAGACCCTGGTGCTGAAGTGATAGCTTTATCACCAAAAACACTAATGGCAACAAATAGATTTGTTTGTGAAATTTGCAACAAAGGATTTCAAAGAGATCAGAATTTGCAGCTTCACAGAAGAGGACACAATTTGCCATGGAAACTCAAGCAGAGAACAAGCAAAGAAATAAGAAAGAAAGTTTATGTTTGTCCAGAGCCAAGTTGTCTACACCATGACCCATCTAGAGCACTTGGAGATCTCACTGGAATCAAGAAACACTTTTGCAGAAAACATGGTGAAAAGAAGTGGAAATGTGAGAAATGTTCAAAGAAATATGCAGTTCAATCTGACTGGAAAGCTCACTCTAAGACTTGTGGTACTAAAGAGTATAGATGTGATTGTGGAACTCTTTTCTCAAGGAGGGATAGTTTCATCACACACCGAGCATTTTGTGACGCTTTAGCAGAAGAGACTGCAAGAGCAATAACAGGAGATCCAATTCTTCCATCTCAAACTGCTTCTTCTTCTCACATGAACCTTCAGTTTCATCCATCTCAGTTTAATAGCCATGAATTTCCAGCTACATTTTCTTTGAAGAAAGAGCAACAAACCGGTTTCAACTTGAGGCCTGAGATTCCGCCATGGCTAATGACTTGCCAACCATTGGTTGGCACTGGTGGTCCAGGTCCTGGTCTACCACCACCGCAACCCATTGACCTAAGCTCGTCGATTTTCCAATCGACTAGGTTCGATCAGGACTACACGCCGAACCACGGCCAAGACGTAAACCCTAACCCTAGTCCTAATTTCAATTCAACAGGAGGACTAGGCTCTCCGCATATTTCTGCAACAGCGTTGCTGCAGAAGGCAGCACAGATGGGTGCGACTATGAGTAACAAATCCAGTACTGTCTCTGCAGCAGCCACAGGCCCAAGCCCAACCATGCTAATGAGACCCCACCAATTTCACGTGTCTGCTGCAGCTGTTGAGTCTGTTAGCAACAACACAACTGATGTTGGGCTTAATTTGTCCTCAAGTGAAGACCTCACTACTGGGTTTTTGAATAGCTTAACTTCATATGGGAATAAAGCTGCTACTATTACTGTTGCTGCTGCTGCTGCTACTGCTACAGTCAGTCCATTAACAAGTGCACCATCTCCCACTTCTTTTTTGATGACTTCGTTTTCTTCTGCTAATACTACTGGATTTGAAGGGTCAAATTTCGAAGATGAATTTGGTGGCATTGGCATTTTGAATTCGAAGAAAGGAAATGACGCTAATGATGATATGACCAAAGATTTCTTGGGTTTAAGACCTCTTTCTCATAGCGATATTTTCAACATAGCTGGTCTAGTTAATACTACTTCAAATGAGAATCAGTCTCAGAATCACAAAACATGGCAAAGTTAA
Protein Sequence:
- >XP_009774629.1|Nicotiana_sylvestris|C2H2|XP_009774629.1
MIKGFMNQQNQPVVVEENMSNLTSASGEAASVSSCNRNDNNNNNTITGGIYPPQYNFAPPNQQVQAQHQIKKKRNQPGNPDPGAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPSCLHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYRCDCGTLFSRRDSFITHRAFCDALAEETARAITGDPILPSQTASSSHMNLQFHPSQFNSHEFPATFSLKKEQQTGFNLRPEIPPWLMTCQPLVGTGGPGPGLPPPQPIDLSSSIFQSTRFDQDYTPNHGQDVNPNPSPNFNSTGGLGSPHISATALLQKAAQMGATMSNKSSTVSAAATGPSPTMLMRPHQFHVSAAAVESVSNNTTDVGLNLSSSEDLTTGFLNSLTSYGNKAATITVAAAAATATVSPLTSAPSPTSFLMTSFSSANTTGFEGSNFEDEFGGIGILNSKKGNDANDDMTKDFLGLRPLSHSDIFNIAGLVNTTSNENQSQNHKTWQS