Information report for SapurV1A.0862s0060.1.p
Gene Details
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Functional Annotation
- Refseq: XP_006377062.2 — uncharacterized protein LOC18103947
- TrEMBL: A0A2K1YDH3 — A0A2K1YDH3_POPTR; Uncharacterized protein
- STRING: POPTR_0012s13010.1 — (Populus trichocarpa)
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Gossypium arboreum: Cotton_A_36602_BGI-A2_v1.0, Cotton_A_01293_BGI-A2_v1.0
- Gossypium hirsutum: Gh_D12G2446, Gh_A12G2312, Gh_A08G2455
- Manihot esculenta: Manes.06G149800.1.p, Manes.14G024700.1.p
- Populus trichocarpa: Potri.012G143200.2, Potri.012G143200.1, Potri.015G146300.2, Potri.015G146300.1
- Prunus mume: XP_008234210.1
- Prunus persica: Prupe.2G297500.1.p
- Pyrus bretschneideri: Pbr031344.1
- Ricinus communis: 30169.m006244
- Vitis vinifera: GSVIVT01028908001
- Ziziphus jujuba: XP_015888867.1, XP_015888864.1, XP_015888857.1, XP_015888868.1
Sequences
CDS Sequence:
- >SapurV1A.0862s0060.1.p|Salix_purpurea|C2H2|SapurV1A.0862s0060.1.p
ATGCCAGTTGTGAAGCCCGTGAACAGTATTACTGATGTGATGAGACCGGATGAGGGGAATGATTCTTCCCTAGATACATTCATCAGGGATACCATTGGCAAACAGCCGCTTCTTTCTTTTTCAAGGCCGAATGATAACCCTGTTCAGTGGATCCAATTACTTCATGCTCTCGATCAGCCAGATTACCCAGGTTGGCCTTTGCTCACTCCTTTGAAGGTGCAGATGCAAAAGTGCAGCAAGTGTTCCCGAGAGTTTTGCTCTTCCATTAACTATAGAAGACACTTGCGGGTTCATCATCGATTGAAAAGACTTGATAAGGATTCTGCCAAAAATAGGGACTTGTTAGGAGCATTTTGGGATAAGCTCTCTGAGGATGAGGGAAAGGAAATCTTATCATTCAAGGACGTTACTTTTGAGGAAGTCCCAGGGTCTTCAATTATAAGGTCATTGACGACAGTTATTCGGAAACCAGGGATCTCTTCACTTACTCAATCTTGCTGGAGAGCTGGTTCTACCCTTTTGGATCTTGTCCAGGGGAGGCCCTCTAGGTTTCCTTTGTCTTCTGAGCAGCTCTTCAGTATTCTTGACGATGCAAGTGAAAAAACGTTTTTATGTGGAACAGCTGTATTAATACAAAAATATATTTTTGATGGAGGAGCTGGGAAGATTGGGCTTGAAACAAAGAATATAGTTGCTTGCACAAGCTTTGTGGTGGAACAGAAATTGATTAATGCATGGCTTGCAGAACAGGATGCAGAAGCTTTGAGGTGCCAAAATTTGCTTGTGGAGGAAGAGGAAGCTGCACAAAGAAGGCAAGTCGAACTCCTGGAAAGGAAGAGGCAGAAAAAACTGAGGCTCAAAGAGCAGAAAGAAAAGGAGCAACGGCTAGACGAAAAGGTTGATGATAAGGAGTGTATTGAGGATACACTGGAGTCTGTGCCTCAAGCTGAACAATCATGTCCTTTGGCTATATCTGATTCTGATTCGCTTGGTTCAGAGACTCTGCCAGATGATGTTCCCTCATCTCTTGAACCCTTACAACTAACTCGAACAGATGAAGATTTTGATTTGGAAAATCACATGGGATGTGGTGGTGGACGGTCAATGTTACAAGGAAAGAGTTATAGGCACGTTGTTGTTGCTCAATGGCATGCTCCTTTAAAATCACAGTGGAATCATCTGTCCTATGGTTTCCATGCTAATCAAAATTCTCACGCTCCAAAACCTGGCACCAAACAGAAGCATGGAAATCAAAGGGATTTTAATTTTAAGCCTGGACCTGTAATGAATGGCAATAGAAAATGGAGCCGAAAACCTAAACCAGAATATAATGGGGAGAGTTTGAAAGATAGAATGCAAAAGGAAGTAGTGACCGGACTGGATCATGATAAGAAGGGGGAGGTTCTGATTGGTTCTATATCTGTCACACTTGGAGATTGTAGCAATGATGGAGGTAACAATTCAGATGGAGTCAGAGATGGTTGCCTGGTAGAGCATGAAATTCTAAAGAAGAAAAATGTGCAGGAGAAGCACTACAGACCTGATTTGGTCCAATGTGGCTCAAGCCGTTCAACAGTAAAGCTTTGGAGGCCTGTTAGTCGAAATGGAATGAAAGGTCAAATGATAACTGAAAACGTCAGCAGAGAATGCCAACATGACAGCATTGATGGTAAGGGTGAGGATCAGATCTTCAATGATAGCTCTCTAAGATCATGTGCCATGGACAATACTTTTGGTGGGATGGAAAATGATTCTCTACCTGGAAGGCTTCTTCCCGGAGTCATGCAATTTACAAGCCATGAAGCAAGGGCTTTTCTTGCTGAGAGGTGGAAGGAGGCCATTGCAGCGGAACATGTGAAATTGGCTCTATCCCCAGGCAATCAAATTGCTACAAATCATTCATCGGATATCAGTAAGCACAACGATATCAGCAGGGCAGAAAATCAATCGGTTGATGTGGAGGCACAGGAGTCTTCAACTTCTGGAGCTGATAGAGCCAAGTATAAAACAAAGCCTGATAATGGTGTCAAGTTAAAGTATATACCGAAACAAAGAACGATCATTTAA
Protein Sequence:
- >SapurV1A.0862s0060.1.p|Salix_purpurea|C2H2|SapurV1A.0862s0060.1.p
MPVVKPVNSITDVMRPDEGNDSSLDTFIRDTIGKQPLLSFSRPNDNPVQWIQLLHALDQPDYPGWPLLTPLKVQMQKCSKCSREFCSSINYRRHLRVHHRLKRLDKDSAKNRDLLGAFWDKLSEDEGKEILSFKDVTFEEVPGSSIIRSLTTVIRKPGISSLTQSCWRAGSTLLDLVQGRPSRFPLSSEQLFSILDDASEKTFLCGTAVLIQKYIFDGGAGKIGLETKNIVACTSFVVEQKLINAWLAEQDAEALRCQNLLVEEEEAAQRRQVELLERKRQKKLRLKEQKEKEQRLDEKVDDKECIEDTLESVPQAEQSCPLAISDSDSLGSETLPDDVPSSLEPLQLTRTDEDFDLENHMGCGGGRSMLQGKSYRHVVVAQWHAPLKSQWNHLSYGFHANQNSHAPKPGTKQKHGNQRDFNFKPGPVMNGNRKWSRKPKPEYNGESLKDRMQKEVVTGLDHDKKGEVLIGSISVTLGDCSNDGGNNSDGVRDGCLVEHEILKKKNVQEKHYRPDLVQCGSSRSTVKLWRPVSRNGMKGQMITENVSRECQHDSIDGKGEDQIFNDSSLRSCAMDNTFGGMENDSLPGRLLPGVMQFTSHEARAFLAERWKEAIAAEHVKLALSPGNQIATNHSSDISKHNDISRAENQSVDVEAQESSTSGADRAKYKTKPDNGVKLKYIPKQRTII*