Information report for PGSC0003DMP400027705
Gene Details
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Functional Annotation
- Refseq: XP_006353878.1 — PREDICTED: uncharacterized protein LOC102605991
- TrEMBL: M1BAI6 — M1BAI6_SOLTU; Uncharacterized protein
- STRING: PGSC0003DMT400040843 — (Solanum tuberosum)
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: Achn081281
- Capsicum annuum: CA03g18340
- Nicotiana benthamiana: Niben101Scf06186g07017.1, Niben101Scf00595g03001.1
- Nicotiana tabacum: XP_016501774.1, XP_016501773.1, XP_016501772.1, XP_016501771.1, XP_016501770.1, XP_016501769.1, XP_016505846.1, XP_016505844.1, XP_016505843.1, XP_016505845.1
- Salvia miltiorrhiza: SMil_00003924-RA_Salv
- Solanum lycopersicum: Solyc03g025440.2.1
- Solanum melongena: Sme2.5_02276.1_g00005.1
- Vitis vinifera: GSVIVT01028908001
Sequences
CDS Sequence:
- >PGSC0003DMP400027705|Solanum_tuberosum|C2H2|PGSC0003DMP400027705
ATGCCGGTTGCAAAGCTCAGCATTGGTGCTACTCCAGCTGCAATGAAAGCAGACGAGGGAAATGATCCTCTTGATACCTTAATTAGGCAAGCCATAGGAAAGGAGCCTCTTTTTTCTTTCTCAAGAACAGGGGATGGGCCTGTCCAGTGGATTCAACTGCTTAATGGATTAGAGCAGCAAGATAATGCTGGTGGTTGGCCAATGCTAACACCAGCGAAATATCAGAAGTGTGAAAAATGTTCACGGGAATTTTATTCCCCTATAAATTATCGGAGGCATATGCGTCTACATCGTCGAGCCTTAAACTTTGATAAGGAGTCTCGCAAATATAGGGATCTGCTGGGAGCATTCTGGGATAAGCTCTCACTTGATGATATTAAGGAAGTTGTATCATTGCATGATGTTTCAATAAAGGATATTTCTGGATCTTCACTTGTTCAGGACCTGGCAACATCTATGCGAAAACCGGCGGTCTGGACTCTTCCCCAAGATTATTATAAGGCTGGCTTAGCTTTGTTGGACCTCATCCAAGGTATACCTTCCAAGTTTAACTCTCGGGAATTATTTAGCATCCTTGATGATGCTAGCGAAAGAACATTTTTATGTGCTGGTACAGCTGAGTCTCTGCAAAAATATGTTTTTGATGGGGATGCTTCCAAAAAAGGTCCTGAGCTGAAAAACTTGGTAGCTTGCACTAGCTTCCTTTTTGAACAGAAACTGGTAAAAGCATGGTTTGCAGACAAAGATGCTGAAGCTTTGAGATGCCAGAAGTTGCTTTTTGAAGAGGAGGAAGCTGCTCAAAAAAAGCAAGCTGAGTTGTTGGAAAGGAAAAAACAGAAAAAGCTTAGACAGAAGGAACAGAGAGAAAGGGAGCAATCAAATTGGGAAAGAGGTGATTTGGAGGTTCCAATGGCAGAATCTTCCATCCTTTCAGCTGCAGTATCTGATTCTAACTCAAGTACTCCCGAAGTATCTGACGATACCTCCTCCTGCCTTGAACTTGTACAATTCTCTAACAATGAAGCTATAGACATTGAAGCGCAACTTAATCTCTCTAACCAGCAGCATCTGGATCTGGTAGAAATTCAGGATGTTGAGCCCCAACCAGTATCTGCACAGAGTCGACGACATTTCCCCCATACCCAGTGGCAAGTGCCAAAGTCACAAAGAATGGGGCGAAATGGTTCCCATAACAACCAGAATCATCAAGTACAAAAACTTGAACCAGTGCAGAAGCATGGAGTTTTTAAAGACCGAGGTACCCCTGTTAATAGCAGTAAAATTTGGACTAAAAAAATTAGAGTGCTAAATGGTGAGCGCTTTAGACCGGAGCCGCAGAAGGAGGCAATAGATCAAAATCAGAGTAACTGTGAAGTGATGATTGGTTCTATTTCTGTTCCAATGAAAAATTGCAGCACTCCCGGACTGGGTAACTGTCCTGCTGTAGAAAGAGACAACTTCGACAGCACAGAACCAGCCATGACTAAAAAGTGTAATCTTGCAGTGAAACCAGCAAAGCAAGATGCTCTTCAGGGTGGGTCAAATGGGGCAGCTGTGAAGCTTTGGAGGCCTGTGAGCAGGCATGGAAGTGGACAACATCCCGAAGAGGCTGTGATTAGTGAAAAGTTGGATAATCAGATTTCATCCACTGAAAATTGTTTGCAATCGTGCTCTATGGACAACCCTATTGGCAAAAGTAAGAATTACACATATCAGGTTGATGGTAATGTTCATCAAGGTCTGGGATTTTGCAGTACTTCTGCAAAAGCTTTTCTCTCTCAGAGATGGAAGGAGGCTATCTCCGGGGATCATGTTACATTAGTCCTTTCCAATGACACCGAAGTTTATGGACATCCAGATGCGCAAAACAGCAGTTCAGAAGCAGCTCCAACATCAGATGATCAGGAGCATGGCGTTCTTGTCAAAGCTGATAACCAGCAGACAAATACTGGAGTTTCTAATTTATCTTCCCGTGGCAATTCTAAACTTAAGTTCAGGCAGAAGCCTGATAAGTCTATTAAGACAAGGTACATTCCAAAGCAAAAACCATAA
Protein Sequence:
- >PGSC0003DMP400027705|Solanum_tuberosum|C2H2|PGSC0003DMP400027705
MPVAKLSIGATPAAMKADEGNDPLDTLIRQAIGKEPLFSFSRTGDGPVQWIQLLNGLEQQDNAGGWPMLTPAKYQKCEKCSREFYSPINYRRHMRLHRRALNFDKESRKYRDLLGAFWDKLSLDDIKEVVSLHDVSIKDISGSSLVQDLATSMRKPAVWTLPQDYYKAGLALLDLIQGIPSKFNSRELFSILDDASERTFLCAGTAESLQKYVFDGDASKKGPELKNLVACTSFLFEQKLVKAWFADKDAEALRCQKLLFEEEEAAQKKQAELLERKKQKKLRQKEQREREQSNWERGDLEVPMAESSILSAAVSDSNSSTPEVSDDTSSCLELVQFSNNEAIDIEAQLNLSNQQHLDLVEIQDVEPQPVSAQSRRHFPHTQWQVPKSQRMGRNGSHNNQNHQVQKLEPVQKHGVFKDRGTPVNSSKIWTKKIRVLNGERFRPEPQKEAIDQNQSNCEVMIGSISVPMKNCSTPGLGNCPAVERDNFDSTEPAMTKKCNLAVKPAKQDALQGGSNGAAVKLWRPVSRHGSGQHPEEAVISEKLDNQISSTENCLQSCSMDNPIGKSKNYTYQVDGNVHQGLGFCSTSAKAFLSQRWKEAISGDHVTLVLSNDTEVYGHPDAQNSSSEAAPTSDDQEHGVLVKADNQQTNTGVSNLSSRGNSKLKFRQKPDKSIKTRYIPKQKP*