Information report for Pavir.J682800.1.p
Gene Details
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Functional Annotation
- Refseq: XP_025802400.1 — protein indeterminate-domain 1-like
- TrEMBL: A0A2T7EXX2 — A0A2T7EXX2_9POAL; Uncharacterized protein
- STRING: Pavir.J25784.1.p — (Panicum virgatum)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Brachypodium distachyon: Bradi1g23470.1.p, Bradi1g18370.30.p, Bradi1g18370.29.p, Bradi1g18370.28.p, Bradi1g18370.27.p, Bradi1g18370.26.p, Bradi1g18370.25.p, Bradi1g18370.24.p
- Setaria italica: Seita.2G368500.1.p
- Setaria viridis: Sevir.2G379600.1.p
- Triticum aestivum: Traes_2BS_C270C0C9F.2, Traes_2BS_13A816248.1
- Zea mays: GRMZM2G022213_P01
Sequences
CDS Sequence:
- >Pavir.J682800.1.p|Panicum_virgatum|C2H2|Pavir.J682800.1.p
ATGACGCCGACGGAGCCGGAGCCCGGGCCCGAGCAGGCGGCGCCGGAGGCGGCGCTCCCCTTGGCGGCGGCCGCGCCGGCGCCGGTCAAGAAGAAGCGGAACCTCCCCGGGACGCCAGATCCGGACGCCGAGGTGATCGCGCTCTCGCCGGGGACGCTGCTGGCCACGAACCGCTTCGTCTGCGAGGTGTGCGGGAAGGGCTTCCAGCGGGACCAGAACCTGCAGCTGCACCGGAGGGGGCACAACCTGCCCTGGCGCCTTCGGCAGCGCGGGCCCGGCGCCGCGCCGCCGCGCCGCCGGGTCTACGTGTGCCCCGAGCCCGGGTGCGTGCACCACTCCCCGGCCCGCGCGCTCGGCGACCTCACCGGGATCAAGAAGCACTTCTGCCGCAAGCACGGGGAGAAGCGCTGGGCCTGCCCGCGCTGCGGCAAGCGCTACGCCGTCCAGGCAGACCTCAAGGCGCACGCCAAGATCTGCGGCACCCGCGAGTACCGCTGCGACTGCGGCACGCTCTTCACCAGACGGGACAGTTTCGTGACGCACCGCGCCTTCTGCGGCGCCCTCGTGGAGGAGGCCGGCAGGGCGCTGGCGCCACCGGCGCCGCCATCGCCTCGGCCGCCTGATTTGGAGGCTGAGGAGAATGTGGACAAGGACAAGGAGAAGGGGCAGGAGGAAGAGGAGAATGAGGACTCTGCACTGGCCGAGGCGGAGCAGCCTCAGCGTGTGGAGGCACCGGTGCCGGAAGCGCCACAGCGCCATCCGTCACCACCTCCATTGCCACAGGAGCCACCGCCCCATCCGTCATCACCTCCATTGCCAAAGGAGCCGCTGCGCCGTCCGTCTCCACCTCCATTGCCAAAGGAGCCGCTGCGCCGTCCGTCCCCACCTCCATTGCCAAAGGAGCCGCCACACCGTCCGTCCCCACCTCCATTGCCAAAGGAGCCGCTGCGCCGTCCGTCCCCACCTCCATTGCCAAAGGAGCCACAGCTCTTTCCCTCCCCACTTCCATTTCCACTGGAGCAGCGACCAGTTGTGGCAGTGGTGCCAAATGTGGATGGGCCAGAGGTGGTTGCTGAGACAACTGTGGCTGCCAAATTGGAGGATGAAGCTGATCAAGATGAAGACACATGCTTCCAGGAAGCTGATCAATTCAAGGAAGCTGAACTTGAGGTCTCCAATCTGCTGGACAAAGACACTCCAATGCTTCCTTGCTTCCTCCCATCACCCTCAGAGGCCATTGGTACCGATGGGAGCAGCACCACCTGTGGTGCTGGCGGCAGTGTTTCCAATTCTATCGCGCCATCTACAACAACCAACACTTTTGCCGGTCTGTTTGCCTCAGCCACAACAAGCACCACTTCCCAGAGCAGATCTCTGCGTGATCTCATTGGTGTTGATCCCACCTTCCTTTGCCTTGCGATCGGTGCGCCCTCCTCTCTGTTCCCACAGACAAGCGCAAGCAATCCAGGCACTTTCGCTGCACCTCCGGCCCCTCACATGTCCGCAACTGCGCTCCTGCAGAAGGCAGCCGAAGTTGGGGCTTCGCAATCAAGCTCATCCTTCCTGAAGGAATTTGGGCTTGCCTCTTCCTCAACATCATCGCCTCCATTGAAGCAGCCACCTCAAGGACGGTTTACTGAAAACAGCGCGCTACCGTGGCACCACTGCAGTAATCAGCACATGGAGATGGAGCACCATCGGAATCATCAGCAGAGGGAGATGGAGTCCAGTTCGCAACCTTGGCACCACCGGAGTACTCAGCAAATGGAGATGGAGCGCCACCGGAACAACCAACAAAGGGAGATGGAGTCGAGTTCGCAAAGGTGGCACCACCACCGGAGTGATCAGCAAATGGACATGGAGCGCCACCGGAGTAATCAGCAAATGCAGATGGAGTCCAGCCTGCAACGGTGGCCACACCACAGGAGCAATCAGCAAATGGAGGTGAGTAATCAGCAAATGCAGATGGAGTCCAGCACGCAACAGTGGCCGCACCACAGGAGCAGTCAGCAAATGGAGTTGATGGAGCGGCACCACTGGAGTAGTCAGCAAATGGAGTGGGAGTCCAGGGCAATGCTATCTGGGGGTCTAGGCCTTGGTCTCGCATACGAAAGTGGAAATTCAGGGTTGCCGGACCTGATGATGGGGCCATCACCACTGTTCGGTCCCAAGCCTGCTACGCTGGACTTCCTTGGGCTTGGCATCGGAGGGACCATGGACGGCTCCACGGCCAACGGTGGCCTCCCGGCATTGATGGTTGGAGGAGAGCTGGCCATGGGGTCTTCGGCACAGGTGCCGGCGCCATGGGAGGACGCCAAGAGGAAGACCAACGGCCGCACGATCCTGTGA
Protein Sequence:
- >Pavir.J682800.1.p|Panicum_virgatum|C2H2|Pavir.J682800.1.p
MTPTEPEPGPEQAAPEAALPLAAAAPAPVKKKRNLPGTPDPDAEVIALSPGTLLATNRFVCEVCGKGFQRDQNLQLHRRGHNLPWRLRQRGPGAAPPRRRVYVCPEPGCVHHSPARALGDLTGIKKHFCRKHGEKRWACPRCGKRYAVQADLKAHAKICGTREYRCDCGTLFTRRDSFVTHRAFCGALVEEAGRALAPPAPPSPRPPDLEAEENVDKDKEKGQEEEENEDSALAEAEQPQRVEAPVPEAPQRHPSPPPLPQEPPPHPSSPPLPKEPLRRPSPPPLPKEPLRRPSPPPLPKEPPHRPSPPPLPKEPLRRPSPPPLPKEPQLFPSPLPFPLEQRPVVAVVPNVDGPEVVAETTVAAKLEDEADQDEDTCFQEADQFKEAELEVSNLLDKDTPMLPCFLPSPSEAIGTDGSSTTCGAGGSVSNSIAPSTTTNTFAGLFASATTSTTSQSRSLRDLIGVDPTFLCLAIGAPSSLFPQTSASNPGTFAAPPAPHMSATALLQKAAEVGASQSSSSFLKEFGLASSSTSSPPLKQPPQGRFTENSALPWHHCSNQHMEMEHHRNHQQREMESSSQPWHHRSTQQMEMERHRNNQQREMESSSQRWHHHRSDQQMDMERHRSNQQMQMESSLQRWPHHRSNQQMEVSNQQMQMESSTQQWPHHRSSQQMELMERHHWSSQQMEWESRAMLSGGLGLGLAYESGNSGLPDLMMGPSPLFGPKPATLDFLGLGIGGTMDGSTANGGLPALMVGGELAMGSSAQVPAPWEDAKRKTNGRTIL*