Information report for DCAR_015294
Gene Details
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Functional Annotation
- Refseq: XP_017247322.1 — PREDICTED: probable lysine-specific demethylase ELF6
- TrEMBL: A0A165WB85 — A0A165WB85_DAUCS; Uncharacterized protein
- GO:0045814 — Biological Process — negative regulation of gene expression, epigenetic
- GO:0048579 — Biological Process — negative regulation of long-day photoperiodism, flowering
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0032452 — Molecular Function — histone demethylase activity
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: Achn364631, Achn204031
- Arachis hypogaea: Ahy009510
- Artemisia annua: Aan014418
- Citrus sinensis: orange1.1g001193m, orange1.1g001158m, orange1.1g001121m, orange1.1g000392m
- Gossypium hirsutum: Gh_D05G2825, Gohir.D05G296300
- Nicotiana attenuata: A4A49_07168
- Nicotiana tabacum: XP_016451017.1, XP_016451016.1
- Petunia inflata: Peinf101Scf01444g00019.1, Peinf101Scf02425g00011.1
- Sesamum indicum: XP_011084321.1, SIN_1004762
- Vitis vinifera: VIT_13s0019g04530
Sequences
CDS Sequence:
- >DCAR_015294|Daucus_carota|C2H2|DCAR_015294
ATGCCTGCCAACTTCTGGTTTATAATTATGCTTTATATTTATACAATACAAAACCAGGATACATCAATCAAGGATATAATATCATCAGCATGTGAGAGAAATGTCACAGAGAACAAAGAAATAGTGACCGGAGGACAGATTGATTTGACAAAGAGATGTGTGCAACCCTCAACCGTGGAGGATCAAGTACAGGCTTCTACTTTATTAGTTCAAACACCAACCGGAGCATTTTCAAGTGTCGAAAGATCACAGTCAATGTGTTGTGTGGAAGAAATATCTCTGAGTTCTTCAATAGATAATTTCAGTCATGGCCCAAACACTTACTTCAGACCACGGATATTCTGTTTGGAGCATGCAATTCAGGTTGAGGAATTGTTGTCTGGTAAAGGGGGAGCAGATGTGCTTGTAATTTGTCATTCAGATTTCAAGAAAATTAGATTACATGCTGCAGCAGTAGCTGATGAAATTGGTAAACCTTTCAGTTATCAGGAGGTTCCATTAGATAATGCCTCCCCAGAAGATTTGAAGCTTATCAATTTTGCAATTGATGATGAAGGACAGGATGAATCTAAAGAAGACTGGACATCAACGGTGAAAATAAATTTGCGGCATTGTCTGAAGACCTTTAAAAAATATCCTTCTGAGGAACTGCAGCATGCATTGACTTTGAAGGGGTTATGCTTTGACAAAGCTTTTAACGGAAGTTTTCCTAGCTTTAAGTGGAAATCTGCTAAATTGCGCTCTAAAAGGAGGAAACTAAATCAATCTGAAAGCAAATCATCTGAGAGCATACTGATGAAAAATGATGAAGCCTTAGAATCAGTATCAGATGCGCCCTTTCCCGATAAACAAGTTAAGCTTGTTCACGATGCGCCCCTTCCTGATAAACAAGTTAAGCTTGTGAGCAAATCATCTGAGAGCATGCTGATGAAAAATGATGAAGCCTTAGAATCAGTATCAGATGCGCCCCTTCCTGATAAACAAGTTAAGCTTGTTCACGATGCTCCCCTTCCTGATAAACAAGTTAAGATTGTAAGCAAATCATCTGAGAGCATGCTGATGAAAAATGATGAAGCCTTAAAATCAGTATCAGATGCGCCCCTTCCTGATAAACAAGTTAAGCTTGTTCAAGATGCGCCCCTTCCTGTTAAACAAGTTAAGCTTGTTCACGATGCACCACTTCCTGATAAACAAGTTAAGCTTGTTCACAATGCGCCCCTTCCTGATAAACAAGTTAAGCTTGTTCACGATGCGCGCCTTCCTGATAAACAAGTTAAGCTTGTTCACTATGTTAGAAGGTTCAAATCTAAGAATTCTGGTTCTGGCAAAACATTCAAAATTTTGGAAGATTCTCAAAAAGGCCTCGTACCTGTCAATTGTGCGGATCTTGATAAAAACAAACATAATGGTGTTGCAGATAACATCAGTATATATGAAAATACAGGTCGGGGTTCTTCTGAACGAAGTGTGCTAATTCCGGGCCAGCAATCTGACATGCAACAGAAAAGCAAGTGCCCTGTGGAAAGAAGGAATGTTAATGAGAGTCCTGTTCTTTCTGAAATTAAGTCAAATTTACTTTCTGCTGAACCTGTGATTGGAAATGTAACATCACAAAGTGGAAGATCAAAGGAATTGATGATGATGGATGAGGCATTTGGTTCAGCAATTTTTGATTCCCAGATGCAGCAGGAGATAAAGCTGGTTGGTAATAGTAGCGAAAAGAATGGAAATTCTTCTGCCGGGTCACCTGAAGTTCCCATTTTAAGTACGGTTGCTTGTCAAACCCCCGACTTTGTCCAAGTTGAGAGAGAAAATCAAATGATAGAAGGATTGTGTTCACAACATGTAAATTCTAATCTAGTGAATGCTGGTAAAAGTGGTGTGCTGCACAAACTCCAGGGTAGTGCAGATGCTTCCACGAATGAGGTCTCTGATCCTAATATCTCTCAGGTTCCAGACACTGAAGTAGAAAGGTTAAATGAGCACATTGAGAAACCACTTTCAGTAGTGAATATTGGGGCTGACAGTCGCGCAAATTTGTATTGTGAAGTACAGACACAGTTTGCTTCCACAAAAGTGTTCTCTGATCCTACTATCTCTGAGGGTTCAGGTTCCGATATCACCAAAATAGAAAGGTTGAGTGAGCAGATAGAGAAACCAATCATAGAAGTTGATATTGGTGTGAAGAGTCTAAATTTAGAAGGTGAAGTGCAGCCACAGTTTGCTTCCACCAAAGAGATATCTGTTCCAGTTTTATCTGAGCCCGAGGTTTCAGAATCTGATATTAGCACAGTAGAAAGGTCAAGGGAGCAGATCGAGAAACCACTAGTGGAAAAGAATGCTGGGGATAAAAATTGTCCAAGTTTGGAATTTGAACTGCAGCCAGAGTTTGCTTCCGCAAAGGGAAGTAAGGAGGACAGTGTTACTGCCTTTGTGAAAATTACACCATCAACCAACTCTTCTCCAATATCTGTAAAAGAGATTCAGGATGTTCCAGGGGAGGACTCTGCTGCTGACAAAATGGACAGTTTAGGTGAAATAACTCCTTTGCAGGAAATGAAAGAGTTTGACAGACATAATTCTCAAGTACAACCTGATTCAGTAGTAAAACACAACAGGAAAAGAAAACGAGAAAAAGAATTGCTAGCTGATGGTTTTATTAGGAGTCCATGTGAAAGATTGAGGCCAAGGGCCTGCAGTACTGCTTTGGCAGAGAGATCAGTAACAAAGGAGGTTTTGGAAGAGAGACCAGTAACAAAGAAAGTTTTGAAAGAGAAACCAGATACAAAGAAGGTTTTCGAAGAGAAACCAGCAGCAAAGAAGATCCAGGAGTCTTCAGAGCATCCAAGTCGCTGCAAAAATGGTATTAAAAAGAGGAAGGCATCTTATAACTGTGATGTAGATAATTGCAAGCTGAGTTTTGAAACTAAAGAAGAATTGCGTATGCACAAGAATAATAAGTGTCCCCACGAAGGATGTGATAAGACATTCAACTCCCACAAGAACGCAGTACTTCATCTACGTGTTCATGACGATGCCAGGCCTCTTAAATGCCCGTGGGAGGGTTGCACAAAATCATTCAAGTGGGCATGGGCTCGGACAGAGCACATACGAGTTCATACGGGGGAGAAGCCTTACAAATGCAAAGTCAAAGGATGTGGCCGCGAATTCAGGTTTGTTTCAGACTATAGCCGGCATAGAAGAAAGACAGGACATGATAAGACCTAA
Protein Sequence:
- >DCAR_015294|Daucus_carota|C2H2|DCAR_015294
MPANFWFIIMLYIYTIQNQDTSIKDIISSACERNVTENKEIVTGGQIDLTKRCVQPSTVEDQVQASTLLVQTPTGAFSSVERSQSMCCVEEISLSSSIDNFSHGPNTYFRPRIFCLEHAIQVEELLSGKGGADVLVICHSDFKKIRLHAAAVADEIGKPFSYQEVPLDNASPEDLKLINFAIDDEGQDESKEDWTSTVKINLRHCLKTFKKYPSEELQHALTLKGLCFDKAFNGSFPSFKWKSAKLRSKRRKLNQSESKSSESILMKNDEALESVSDAPFPDKQVKLVHDAPLPDKQVKLVSKSSESMLMKNDEALESVSDAPLPDKQVKLVHDAPLPDKQVKIVSKSSESMLMKNDEALKSVSDAPLPDKQVKLVQDAPLPVKQVKLVHDAPLPDKQVKLVHNAPLPDKQVKLVHDARLPDKQVKLVHYVRRFKSKNSGSGKTFKILEDSQKGLVPVNCADLDKNKHNGVADNISIYENTGRGSSERSVLIPGQQSDMQQKSKCPVERRNVNESPVLSEIKSNLLSAEPVIGNVTSQSGRSKELMMMDEAFGSAIFDSQMQQEIKLVGNSSEKNGNSSAGSPEVPILSTVACQTPDFVQVERENQMIEGLCSQHVNSNLVNAGKSGVLHKLQGSADASTNEVSDPNISQVPDTEVERLNEHIEKPLSVVNIGADSRANLYCEVQTQFASTKVFSDPTISEGSGSDITKIERLSEQIEKPIIEVDIGVKSLNLEGEVQPQFASTKEISVPVLSEPEVSESDISTVERSREQIEKPLVEKNAGDKNCPSLEFELQPEFASAKGSKEDSVTAFVKITPSTNSSPISVKEIQDVPGEDSAADKMDSLGEITPLQEMKEFDRHNSQVQPDSVVKHNRKRKREKELLADGFIRSPCERLRPRACSTALAERSVTKEVLEERPVTKKVLKEKPDTKKVFEEKPAAKKIQESSEHPSRCKNGIKKRKASYNCDVDNCKLSFETKEELRMHKNNKCPHEGCDKTFNSHKNAVLHLRVHDDARPLKCPWEGCTKSFKWAWARTEHIRVHTGEKPYKCKVKGCGREFRFVSDYSRHRRKTGHDKT*