Information report for Cc02_g02700
Gene Details
|
|
Functional Annotation
- Refseq: XP_027103753.1 — uncharacterized protein LOC113725006
- TrEMBL: A0A068U9P1 — A0A068U9P1_COFCA; Uncharacterized protein
- STRING: XP_009758251.1 — (Nicotiana sylvestris)
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: Achn081281
- Capsicum annuum: CA03g18340
- Nicotiana benthamiana: Niben101Scf06186g07017.1
- Nicotiana tabacum: XP_016501774.1, XP_016501773.1, XP_016501772.1, XP_016501771.1, XP_016501770.1, XP_016501769.1, XP_016505846.1, XP_016505844.1, XP_016505843.1, XP_016505845.1
- Prunus mume: XP_008234210.1
- Prunus persica: Prupe.2G297500.1.p
- Salvia miltiorrhiza: SMil_00003924-RA_Salv
- Sesamum indicum: XP_011076143.1
- Solanum lycopersicum: Solyc03g025440.2.1
- Solanum tuberosum: PGSC0003DMP400027705
- Vitis vinifera: GSVIVT01028908001
Sequences
CDS Sequence:
- >Cc02_g02700|Coffea_canephora|C2H2|Cc02_g02700
ATGCCAGTTGCAAAACTCAGCACAGGTGGCACTCTTGATTCCATGAAATCAGGAGATGGGAATGATTCTCTTGATACTGTGAGTCGGCAAACTGTTGGGAAGGAGCCTCATATTTCTCTTTCAAGGACGGGGGATATCCCGGTCCCATGGTTTCAGTTGCTTCATGAGCTTCCTGGTTGGCCCTTGCTGAAACCTCTGAAGGTTCAGATGGAGAAGTGTGAGAAGTGCGCACAGGAATTTTGTTCACCGGTTAACTATCGGAGGCACATCAGAGTGCACCGCAGATCATTAAATTTTGACAAGGAATCTCATAAGATTAGAGATATGTTGGCAGCTTTCTGGGACAAGCTCTCACTGGAGGATGCTAAGGAAGTTGTATCATTGAGGGATGTGACTCTAAAGGAAGTTACTGGCACTTCAGTTATCAAATCATTGGCTGCATCTCTCCACAAGCCAGGGGTTTGGACACTTCCACAGGTTTATGTCGAGGCTGGATCTACCCTACTGGATGTCATTCATGCTAAATCCTCTAGGCTTCCTATATCCTCACAGGAATTATTCAGTATTCTTGATGATGCTAGTGAGAGGACTTTCTTACGTGCTGGCACAGCTGAATCTGTGCTAAAGTATATTTTTGGTGGGAAACCTGGAAGAATTGCCTTTGAGTTGAAGAACTTAGTTGCTTGCACTAGCTTTCTTTTTGAACTGAAGCTGGTTAAAGCATGGGTTGCTGACAAAGATGTTGAGGCCTTGAGATGCCAGAAATTGCTTGTGGAGGAGGAGGAAGCTGCTCAGAAAAGGCAAGCTGAGCTGTTGGAAAGGAAAAAGCAAAAGAAGCTCAGGCAGAAGGAACAGAAAGCAAGGGAACATTCAAATGGGGACGGAGTGGCTTTGATTGATGCCACTTCATCAGAGGGATCTTTTCTGGCAGAAATGTGCAGCTCTTCTCCACCTGATTCCAGTCCTGATGCTCCTTGCACTGTAGATGATGGCACCACCTTCCTTGAGCCAGTTCAGCTCTCTAGTACTGAACAAAATAATGACATTGAAGCTCAATTTGATTTGAGCAGTGGCCATTTGGATTCAGGTCTTGTTCAAAATGTAGAACCCACAATGGTATCTGTAAACGGTCGCCGGTGGCGGCAGGTGCCTAAATCCCATTGGGCTGGAAGAAGTGGCTTTCATGGTAATCAGAATCATCAAGTTTCAAAACTTGAACCAGTACAAAAGCTTGTCCCTGCCAAAGATCGAGGTACTGTGGTGAGCAGCAGTAAAGTGTGGACCAAGAAACTTAAAGTGGACAATGATGAGGAGATCTTGAGACCCACACTGGAGGAGGCAGTAAACAAATCAGATGAAAACAAGTGTGAACTGATTATTGGCTCTATATCTATACCAGTTACAAACTGTATCTTAAGGAAAAATAAAATCAGTTTAGGAGAACCTCATTACAGTTGTAGTACTGAGGAAGGTAAACATAAGAGTAATGTTTTGGAGGAACCAGCTAACTCCGACAGCCATCAACTTGGTTTAAATGAAGCTGCCACTGATCTTTGGATGCCTGCGAGTCTTCATGGTTCAAGAGATCCATCACCAGTTCCAAGAGCCAACCATGATGCCCAAGACGGTGTTATGGTTGACAAGCTAGAGGATCGAACTGCCTCTGATGGTAGTTGTTTGCAGTCATCCTCTTCGGATGATGATCATTGCCAAAGCAGGGAGGGTTTGACCTGTGTGTATGAAGGCGTGGCACTGCCTCAAGGTTTGCAGCGCTCCACTGCGGCTGCCAAAGCTTTTCTTGCACAGAGGTGGAAGGAAGCTATCTCAGCGGAGCATGTGACGACACTGGTGCTTTCGGAGGAGTCCGATCTTCCCGGGCTTCCAGAAAATCAAATTGACATTTCGGCTCTTGATTTTGAAAACCGGCAAGTTGACGTGGGTCGTATTTCGTCTACCGGCAGAATTACTAAAGCTAAGAATAGAACAAATTCTGAAAAGGGTGTTAAGATCAAGTACATCCCCAAACAGAAAGTTGCTTCTTAG
Protein Sequence:
- >Cc02_g02700|Coffea_canephora|C2H2|Cc02_g02700
MPVAKLSTGGTLDSMKSGDGNDSLDTVSRQTVGKEPHISLSRTGDIPVPWFQLLHELPGWPLLKPLKVQMEKCEKCAQEFCSPVNYRRHIRVHRRSLNFDKESHKIRDMLAAFWDKLSLEDAKEVVSLRDVTLKEVTGTSVIKSLAASLHKPGVWTLPQVYVEAGSTLLDVIHAKSSRLPISSQELFSILDDASERTFLRAGTAESVLKYIFGGKPGRIAFELKNLVACTSFLFELKLVKAWVADKDVEALRCQKLLVEEEEAAQKRQAELLERKKQKKLRQKEQKAREHSNGDGVALIDATSSEGSFLAEMCSSSPPDSSPDAPCTVDDGTTFLEPVQLSSTEQNNDIEAQFDLSSGHLDSGLVQNVEPTMVSVNGRRWRQVPKSHWAGRSGFHGNQNHQVSKLEPVQKLVPAKDRGTVVSSSKVWTKKLKVDNDEEILRPTLEEAVNKSDENKCELIIGSISIPVTNCILRKNKISLGEPHYSCSTEEGKHKSNVLEEPANSDSHQLGLNEAATDLWMPASLHGSRDPSPVPRANHDAQDGVMVDKLEDRTASDGSCLQSSSSDDDHCQSREGLTCVYEGVALPQGLQRSTAAAKAFLAQRWKEAISAEHVTTLVLSEESDLPGLPENQIDISALDFENRQVDVGRISSTGRITKAKNRTNSEKGVKIKYIPKQKVAS*