Gene Details:

  • Gene ID: RrC9576_p1
  • Gene Family: B3 Family
  • Description: B3 Family protein
  • Species: Raphanus raphanistrum
  • Source: B3 family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_018490384.1  — PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing transcription factor ABI3
  • Refseq:  XP_018490385.1  — PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing transcription factor ABI3-like
  • Swissprot:  Q01593  — ABI3_ARATH; B3 domain-containing transcription factor ABI3
  • TrEMBL:  A0A0D3BD64  — A0A0D3BD64_BRAOL; Uncharacterized protein
  • STRING:  Bo3g083650.1  — (Brassica oleracea)

Gene Ontology:

  • GO:0009657  — Biological Process — plastid organization
  • GO:0009733  — Biological Process — response to auxin
  • GO:0009737  — Biological Process — response to abscisic acid
  • GO:0009793  — Biological Process — embryo development ending in seed dormancy
  • GO:0031930  — Biological Process — mitochondria-nucleus signaling pathway
  • GO:0045893  — Biological Process — positive regulation of transcription, DNA-templated
  • GO:0005634  — Cellular Component — nucleus
  • GO:0005829  — Cellular Component — cytosol
  • GO:0001076  — Molecular Function — transcription factor activity, RNA polymerase II transcription factor binding
  • GO:0003677  — Molecular Function — DNA binding
  • GO:0003700  — Molecular Function — transcription factor activity, sequence-specific DNA binding

Family Introduction:

  • The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
  • All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
  • The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.

Literature:

Sequences:

CDS Sequence:
  • >RrC9576_p1|Raphanus_raphanistrum|B3|RrC9576_p1
    ATGAAAAGCTTGCATGTGGAGGCGAACGGAGGAGATCTGGCTGAAGATTGTGGAATACTCGCCGGAGGCAGTGATGAGGCTGTTTTGATGGATGGGATGGGTGAGGTCGGTAGAGAGATCTGGCTAGATAACCATGAAGGAGACCATGGTCATGGTCATCGTGAAGATGATGATATAATTGTTCATCATGACCCTTCAATGTTCTACGGAGATCTACCAACACTCCCTGACTTCCCATGCATGTCATCATCTTCATCATCTTCAACATCTCCAGCTCCTGTCAACGCCATCGTCTCCTCAGCCTCTTCCTCTTCCGCAGCCTCTTCCTCAACTTCCTCGGCTGCTTCTTGGGCTATATTGAAATCAGACGGTGAAGATCCGACGACTCAGAATCAAAACCAGTACGCATCGGGAAACTGCGATGTCGAGTCTTCAGCCGCACTACAGTCCACTGCTTCCATGGAGATTCCGTTGGATAGTACTCAAGGTTTTGGTTGCGGCGAAGGCGGTGGTGATTGCATTGACATGATGGAGACTTTCGGGTACATGGATCTACTCGATAGCAATGAGTTCTTTGATACTTCAGCCATCTTTAACCAAGACGAGGACACGCAAAACCCTAACTTGATGGAGCAAGCGCTGGAGAGAAAAGACCAGGTCGTTATTCCGGTTATGGAGAATAATAACAGTACTGAAGGAGACATGCAGATGATGAACCCTCCGTTGGAACAAGAGGATGATCTTACGGGAGTGTTCTTGGAGTGGCTGAAGAACAACAAGGAGACGGTTTCAGCTGATGATTTGAGGAAAGTGAAGATAAAGAAAGCTACTATTGAATCAGCAGCTAAAAGGTTAGGCGGTGGGAAAGAAGCGATGAAACAGCTTTTGAAGCTGATTCTTGAATGGGTCCAAACCAATCACCTACAAAGAAGACGCACCAACGATCTCTCATATCAACAAGATCCGTTTCAAAATCCTAACCTACTCCCACCGTCTGATCAAACATGTTTCTCACCTTCCACATGGGTTCCGCCTCCTCCTCAGCCACCACCACCACCACCACCACCACCACAACAACAGGCTTTTGTTTCGGATCCGGGTTTTGGATACATGCCTGCTCCAAATTATCCGTCTCAAGAATATTTTCCATCACTCGAATCTCCACCGACGTGGCCACCACCACCACAGTCTGGTCCCATGCCACTTCAGCAATTCACTATGCCAAACCCTCAGTATACTCCATTTCAAGACCCTGGAGGTGGTTTCACAGGATACAACATGAATCCATATCAATATCCTTATCTTCCTTCTTCCGGACAGATGAGAGATCAGGGATTGCTTCGTTTGTGTTCCTCAGCTACTAAAGAGGCAAGAAAGAAAAGGATGGCGAGACAGAGGAGGTTCTTGTCTCACCACCATAGACACAACAACAATCAGCAGAACCAAACTCAAATCGGAGAAGGCTGTGGTGCTGTGGATCCTCAGCTTAACCATGTACCTACTACAGCCACGGGCGGGACTTGGATGTATTGGCCTAATGTCCCTACCATGCCACCGACGGTCTCATCTCAACTACCGGCGATGGAGACTCAGTTGCCCACCATGGACCGAGCTGGCTCTTCTTCTGTTATGCCACGTCAGCAGGTGGTACCAGATCGCCGGCAGGGATGGAAACCAGAAAAGAACTTGAGGTTTCTCTTGCAGAAAGTGTTGAAGCAAAGCGACGTGGGTAACCTCGGAAGAATCGTCTTGCCAAAAAAAGAAGCTGAGACGCATTTGCCGGAGCTGGAGGCAAGAGACGGCATCTCTTTGGCCATGGAAGACATTGGAACCTCTCGTGTTTGGAACCTGCGCTATAGATTTTGGCCGAACAACAAAAGTAGGATGTATCTCCTCGAAAACACCGGCGATTTTGTGAAAACAAATGGGCTCCAAGAAGGTGACTTCATAGTCATATACTCCGATGTCAAATGTGGAAAATATTTGATACGAGGGGTTAAAGTAAGGCAACCGGCGGGACAAAAGCTAGAGGCTACGTCGTCCTCAGCAGCTGTAACGAAGAGACAAAGCAAGTCGCAGAGGAGCATTAACAACAACTCTCCGTCAGCAAATATAGTCGCTTCACCAACTTCTCAAGCAGTTAAATGA
Protein Sequence:
  • >RrC9576_p1|Raphanus_raphanistrum|B3|RrC9576_p1
    MKSLHVEANGGDLAEDCGILAGGSDEAVLMDGMGEVGREIWLDNHEGDHGHGHREDDDIIVHHDPSMFYGDLPTLPDFPCMSSSSSSSTSPAPVNAIVSSASSSSAASSSTSSAASWAILKSDGEDPTTQNQNQYASGNCDVESSAALQSTASMEIPLDSTQGFGCGEGGGDCIDMMETFGYMDLLDSNEFFDTSAIFNQDEDTQNPNLMEQALERKDQVVIPVMENNNSTEGDMQMMNPPLEQEDDLTGVFLEWLKNNKETVSADDLRKVKIKKATIESAAKRLGGGKEAMKQLLKLILEWVQTNHLQRRRTNDLSYQQDPFQNPNLLPPSDQTCFSPSTWVPPPPQPPPPPPPPPQQQAFVSDPGFGYMPAPNYPSQEYFPSLESPPTWPPPPQSGPMPLQQFTMPNPQYTPFQDPGGGFTGYNMNPYQYPYLPSSGQMRDQGLLRLCSSATKEARKKRMARQRRFLSHHHRHNNNQQNQTQIGEGCGAVDPQLNHVPTTATGGTWMYWPNVPTMPPTVSSQLPAMETQLPTMDRAGSSSVMPRQQVVPDRRQGWKPEKNLRFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELEARDGISLAMEDIGTSRVWNLRYRFWPNNKSRMYLLENTGDFVKTNGLQEGDFIVIYSDVKCGKYLIRGVKVRQPAGQKLEATSSSAAVTKRQSKSQRSINNNSPSANIVASPTSQAVK