Information report for GSBRNA2T00085286001
Gene Details
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Functional Annotation
- Refseq: XP_013627290.1 — PREDICTED: B3 domain-containing transcription factor ABI3
- Swissprot: Q01593 — ABI3_ARATH; B3 domain-containing transcription factor ABI3
- TrEMBL: A0A078FPU9 — A0A078FPU9_BRANA; BnaC03g44820D protein
- STRING: Bo3g083650.1 — (Brassica oleracea)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0009737 — Biological Process — response to abscisic acid
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT3G24650.1, AT3G24650
- Brassica oleracea: XP_013627290.1
- Brassica rapa: XP_009136082.1
- Gossypium arboreum: Cotton_A_33861_BGI-A2_v1.0
- Manihot esculenta: Manes.13G043500.1.p, Manes.12G043500.1.p
- Populus trichocarpa: Potri.002G252000.1
- Raphanus raphanistrum: RrC9576_p1
Sequences
CDS Sequence:
- >GSBRNA2T00085286001|Brassica_napus|B3|GSBRNA2T00085286001
ATGAAAACCTTGCATGTGGCCGCGAAGGGAGGAGATCTGGCGGAGGGTTGTGGAATACTCGCCGGAGACGCTGATGAGACTATTTTGATGGATGGAATTGGTGATGTCGGTAGAGAGATCTGGCTAGATGACCATGGAGGAGACCATGGTCATGGTCATCGTGAAGAGGATGATATAATTGTTCACCATGACCCTTCAATGTTCTACGGAGATCTACCAACACTCCCTGACTTCCCATGCATGTCCTCATCTTCATCATCTTCAACATCTCCAGCTCCCGTCAATGCAATCGTCTCCTCAGCCTCTTCCTCCTCGGCAGCTTCTTCCTCCACTTCCTCAGCTGCTTCTTGGGCTATACTGAAATCAGACGGTGAAGATCCGACGACTCAGAATCAAAACCAGTACGCATCAGGAAACTGTGATGTCGAGTCTTCAGCCGCACTACACAACGAGTTCTTTGATACGTCAGCCATCTTTAACCAAGATGAGGACACGCAAAACCCTAACTTGATGGACCAAACGCTCGAGAGACAAGACCAGATCGTTGTTCCAATGTTGGAGAATAATAATAATAATAGTGGAGGAGACATGCAAGTGATGAATCATTCGCTGGAACAAGAGGATGATCTTGCGGCTGTGTTCTTGGAGTGGCTGAAGAACAACAAGGAGACGGTTTCAGCTGATGATCTGAGGAAAGTGAAGATAAAGAAAGCTACTATTGAATCAGCGGCTAAAAGGCTAGGCGGTGGGAAAGAAGCGATGAAACAGCTTTTGAAGCTGATTCTTGAATGGGTTCAAACTAATCATCTACAAAGAAGACGCACCAACAACAACAATCTCTCATATCAACAAGATCCTTTTCAAAACCCTAACCTAATCCCACCGTCTGATCAAACATGTTTCTCACCGTCCACATGGGTTCCGCCGCCGCCTCAGCCACCACCACCACAACAACCGGCTTTTGTTTCGGATCCGGGTTATGGATACATGCCTGCTCCAAATTATCCGCCTCAAGAGTATCTTCCGTTACTCGAGTCTCCACCGACGTGGCCACCACCACAGTCTGGTCCCATGCCACTTCAGCAATTCACTATGCCAAACCCTCAGTATACTCCATTTCAAGACCCTGGAGGTGGTTTCACTGGATACAACATGAATCCGTATCAATATCCTTATCTTCCTTCGTCTGGGCAAATGAGAGATCAGGGATTGCTTCGTTTGTGTTCCTCAGCTACTAAAGAGGCTAGAAAGAAAAGGATGGCGAGACAGAGGAGGTTCTTGTCTCACCACCATAGACACAACAACAATCAGCAAAACCAGACTCAAATCGGAGAAGTCTGTGGTGCGGTGGATCCTCAGCTTAACCATGTACCTACTACAGCCACTGGCGGGACTTGGATGTATTGGCCTAATGTCCCTGCCATGCCACCGCCGGTATCATCTCAACTACCGGCGATGGAGACTCAGCTGCCCACCATGGACCGAGCTGGCTCTTCTTCTGTTATGCCACGTCAGCAGGTGGTACCAGATCGCCGGCAGGGATGGAAACCAGAAAAGAACTTGCGGTTTCTCTTGCAGAAAGTGTTGAAGCAAAGCGACGTGGGTAATCTCGGAAGAATCGTCTTGCCAAAAAAAGAAGCTGAGACGCACTTGCCGGAGCTGGAGGCAAGAGACGGCATCTCTCTGGCCATGGAAGACATTGGAACCTCTCGTGTTTGGAACCTGCGCTATAGATTTTGGCCGAACAACAAAAGTAGGATGTATCTCCTCGAGAACACCGGCGATTTTGTGAAAACAAATGGGCTCCAAGAAGGTGACTTCATAGTCATATACTCCGATGTCAAGTGTGGAAAATATTTGATACGAGGGGTTAAAGTAAGACAACCAGCGGGACAAAAGCCAGAGGCGTCGTCGTCAGCAGCTGTAACGAAGAGACAAAGCAAGTCGCAGAGGAGCATTAACAACAACTCTCCGTCTGCAAATATAGTCGCTTCACCACCTTCTCAAGCAGTTAAATGA
Protein Sequence:
- >GSBRNA2T00085286001|Brassica_napus|B3|GSBRNA2T00085286001
MKTLHVAAKGGDLAEGCGILAGDADETILMDGIGDVGREIWLDDHGGDHGHGHREEDDIIVHHDPSMFYGDLPTLPDFPCMSSSSSSSTSPAPVNAIVSSASSSSAASSSTSSAASWAILKSDGEDPTTQNQNQYASGNCDVESSAALHNEFFDTSAIFNQDEDTQNPNLMDQTLERQDQIVVPMLENNNNNSGGDMQVMNHSLEQEDDLAAVFLEWLKNNKETVSADDLRKVKIKKATIESAAKRLGGGKEAMKQLLKLILEWVQTNHLQRRRTNNNNLSYQQDPFQNPNLIPPSDQTCFSPSTWVPPPPQPPPPQQPAFVSDPGYGYMPAPNYPPQEYLPLLESPPTWPPPQSGPMPLQQFTMPNPQYTPFQDPGGGFTGYNMNPYQYPYLPSSGQMRDQGLLRLCSSATKEARKKRMARQRRFLSHHHRHNNNQQNQTQIGEVCGAVDPQLNHVPTTATGGTWMYWPNVPAMPPPVSSQLPAMETQLPTMDRAGSSSVMPRQQVVPDRRQGWKPEKNLRFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELEARDGISLAMEDIGTSRVWNLRYRFWPNNKSRMYLLENTGDFVKTNGLQEGDFIVIYSDVKCGKYLIRGVKVRQPAGQKPEASSSAAVTKRQSKSQRSINNNSPSANIVASPPSQAVK*