Information report for PSME_00001422-RA
Gene Details
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Functional Annotation
- TrEMBL: Q9FVK1 — Q9FVK1_PICAB; Transcription factor viviparous 1
- GO:0009657 — Biological Process — plastid organization
- GO:0009733 — Biological Process — response to auxin
- GO:0009737 — Biological Process — response to abscisic acid
- GO:0009793 — Biological Process — embryo development ending in seed dormancy
- GO:0031930 — Biological Process — mitochondria-nucleus signaling pathway
- GO:0045893 — Biological Process — positive regulation of transcription, DNA-templated
- GO:0005634 — Cellular Component — nucleus
- GO:0005829 — Cellular Component — cytosol
- GO:0001076 — Molecular Function — transcription factor activity, RNA polymerase II transcription factor binding
- GO:0003677 — Molecular Function — DNA binding
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Capsicum annuum: CA06g28250
- Glycine max: Glyma.18G176100.2.p, Glyma.18G176100.1.p, Glyma.08G357600.2.p, Glyma.08G357600.1.p, Glyma.08G357600.3.p
- Juglans regia: WALNUT_00018591-RA
- Nicotiana benthamiana: Niben101Scf21140g00009.1
- Nicotiana tabacum: XP_016433829.1, XP_016443113.1, XP_016443112.1, XP_016491387.1, XP_016491386.1
- Populus trichocarpa: Potri.002G252000.1
- Ricinus communis: 30204.m001803
- Solanum melongena: Sme2.5_00827.1_g00006.1
- Solanum tuberosum: PGSC0003DMP400034979
Sequences
CDS Sequence:
- >PSME_00001422-RA|Pseudotsuga_menziesii|B3|PSME_00001422-RA
AGGAACATGGACACGAGCAGTACTGTTCCTACTCAGATCGCCGAAACAAATGAAATCATGAAAGATACAAGCGTTGAAGCTGAGGATTTGAAAGGAAGGATTGAAATGAAAGAGCAGAGCAGCAGAGAAAAACTTAAAGAAGATGAAGAAAAAACAGAAATGGCCACTGAATCATGCGATAACGCTCTAGCCAAGGCTGAGGAATTGATTCCTCCCAGCAGCCCAGAGTGGACAGACTATGAATGCACAGAAACTGATGATCTGTTGGATGCTGCTAGGATTTTTGACTGTGTTAATCTTCCTGTGTTTGAAGAGCTCCAGGACTTGGGTCCTGCAGTACCAGCAACATCCTCGTTGGGTTCTGCTACTACTTCTTCGTCTTCTGCCTCTGCTTCTTCTCCATCTTCGTCTTCTTGGATTCCAAGAAATATCAAGCAGGAGGCCGAAGGTGTAGAAAGGCATTCCTCGACCTGTGCAGCACCAGGAACTCCGTCTGGTGGAGACCAAGATGTTACATTATGTGGCACTGATTCTGCCACCTCTTGTTCATATAATCAAAGCTCCATGGCCCCAGCCCTACAGGTCAATGAACACCACAATGCCGAGTGCTTGTATTCGGATCCTGATCAATCCGAGAAAATTGATGTGTTGGAGGAGCTACAGAACTTGGATTTGTTGGATGGATCTGATGTGTGGGATCCCCTCTTTATTGTTCCGGATTCGTCTGTTTTAGAAGGTCTACAGTCTAGTCTAGACTGTGGATCTTTTGAAGAACGTGCAGATGATTCTTCATCAGAAGAACTTCCAATGGTTTTCTTCGAATGGCTCAAATCTAACCGTGACGCCATTTCTCCAGAAGATCTCAGAAGCATTAAGTTGAAGAGATCGACTATTGAAACCGCAGCTAAGCATTTAGGTGGGGGGAAGAAAGGGATGCTGCATCTACTGAAACTGATACTAGCATGGGTGCAGAATCATCATTTGCAGCGTAAGAGGAAGTTGTATTCTTCGACTCATCAGAGGGTTTTGAACGAGGCGGGCATGTGCACAGGTACGCCTGCTTCATATAATTTTCCAGGGATGGACCATTTTAATCCATGGAATGGTGCAGGAATGGTGCAACAACAAGATAATCGTCAGAATGGGTTGTATAACGATATTTCTCCGAGTTGTAATGTGCCTGTTTATCTGAATTCGGGCGACCCGTCCATGTTTGGAGCAATGCAGGGCTTGCCCGGTTCCGTTGATGCAATTCACGCTGCAAAATATAGACGAATACCTTTAGACGATGGTGCAGCTGGGTCCTTCAGGGATGTGCCCAATTTGATGAATGGAAACAGTGGTTTTACCAACCCTAATGACTGTCAAACAATGTTGCAGCAATCTGCTGTCTTTAATGGCAACCCATGGCCTGCGCAGATGACCGCCATGCTGCACCAGGGATCACAAAACCAACAACATGCCTACTGTAACGCTGCATTGCAAGCATCTCAAGATCATAAATACCGCTTTGCAGCTTCCCAATCCCATTTAGATTACATGAACTACCGCTCACCAAATCCTGCAGCTTCAACCAAGGAGGCCAGAAAGAATAGAATGGCGCGCCAGCGACGATCCATGGCTCACCATCATCACCATCAGAATCGCCAGTGGTCTTCTTCAACAGCAATGCCACCCCAACAAGCCGATCCTATGAATCTCACCCTCATGCAATATCAACGGCAAACATTCATGCAAACTGATCGACGTCAGGGCTGGAAACCAGAAAAACATTTGAAGTTTTTGTTGCAAAAAGTTCTCAAGCAGAGCGACGTTGGCAATCTAGGAAGGATTGTGCTGCCCAAGAAGGAAGCTGAGATTCATCTTCCTGAGCTAGAGGCAAGAGATGGGATCTCAATTGCAATGGAAGACATCGTAACGTCTCGAGTGTGGAACATGCGTTACAGGTTTTGGCCGAATAATAAGAGCAGGATGTATCTGCTTGAAAATACTGGTGACTTTGTGAGATCGAATGGCCTGCAAGAGGGTGACTTCATTGTGATATATTCTGACACGAAGACTGGAAAATATATGATCCGTGGTGTAAAGGTGCCACGGTCAGACGCAACAACATCTGCATCTGCTGCTGCTGCAACTCCGACTACAACCACAAAGAGTGCCAGCGGGTCTTGCTTGATACCAGATGGAGAAGATGCTGCTGCTGCTGCTGCAAGGGTGTTGAAGATTGGGAAAAGTTATGGGGTGCCCACGAGTCAGGCGGTTGGAGTAACTTTTGCAGATTCCATGGCTGACGCGTCCTCGTCTTCGGTGTCGGATGCCACACACTCATGCTCCGAAGGGGATCCCTTTCTCAGAGACATGATAAATCAATTTTCCCCGACAAAGGGTCCAGAGAACGATAATGTACCAAATTTGGAGAGGTTCCCCAGCCTTGACAGCGGGGATCTGATGATGGAAGAGATTTTGGACCTGGTTGAATCGCCAGATATGGCAGACCCAGTACTAAAAAGTCCTGATAATATCGGAGAAAGCAAAGCTTAA
Protein Sequence:
- >PSME_00001422-RA|Pseudotsuga_menziesii|B3|PSME_00001422-RA
RNMDTSSTVPTQIAETNEIMKDTSVEAEDLKGRIEMKEQSSREKLKEDEEKTEMATESCDNALAKAEELIPPSSPEWTDYECTETDDLLDAARIFDCVNLPVFEELQDLGPAVPATSSLGSATTSSSSASASSPSSSSWIPRNIKQEAEGVERHSSTCAAPGTPSGGDQDVTLCGTDSATSCSYNQSSMAPALQVNEHHNAECLYSDPDQSEKIDVLEELQNLDLLDGSDVWDPLFIVPDSSVLEGLQSSLDCGSFEERADDSSSEELPMVFFEWLKSNRDAISPEDLRSIKLKRSTIETAAKHLGGGKKGMLHLLKLILAWVQNHHLQRKRKLYSSTHQRVLNEAGMCTGTPASYNFPGMDHFNPWNGAGMVQQQDNRQNGLYNDISPSCNVPVYLNSGDPSMFGAMQGLPGSVDAIHAAKYRRIPLDDGAAGSFRDVPNLMNGNSGFTNPNDCQTMLQQSAVFNGNPWPAQMTAMLHQGSQNQQHAYCNAALQASQDHKYRFAASQSHLDYMNYRSPNPAASTKEARKNRMARQRRSMAHHHHHQNRQWSSSTAMPPQQADPMNLTLMQYQRQTFMQTDRRQGWKPEKHLKFLLQKVLKQSDVGNLGRIVLPKKEAEIHLPELEARDGISIAMEDIVTSRVWNMRYRFWPNNKSRMYLLENTGDFVRSNGLQEGDFIVIYSDTKTGKYMIRGVKVPRSDATTSASAAAATPTTTTKSASGSCLIPDGEDAAAAAARVLKIGKSYGVPTSQAVGVTFADSMADASSSSVSDATHSCSEGDPFLRDMINQFSPTKGPENDNVPNLERFPSLDSGDLMMEEILDLVESPDMADPVLKSPDNIGESKA