Information report for CA06g28250
Gene Details
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Functional Annotation
- Refseq: XP_016577482.1 — PREDICTED: B3 domain-containing transcription factor ABI3-like isoform X2
- TrEMBL: A0A1U8H1Z4 — A0A1U8H1Z4_CAPAN; Uncharacterized protein
- TrEMBL: A0A2G2ZEH2 — A0A2G2ZEH2_CAPAN; B3 domain-containing transcription factor ABI3-like isoform X2
- STRING: Solyc06g083600.1.1 — (Solanum lycopersicum)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Nicotiana benthamiana: Niben101Scf21140g00009.1, Niben101Scf01220g02008.1, Niben101Scf01687g08001.1
- Nicotiana tabacum: XP_016463850.1, XP_016491387.1, XP_016491386.1, XP_016433829.1, XP_016443113.1, XP_016443112.1
- Petunia inflata: Peinf101Scf00191g31018.1
- Sesamum indicum: XP_011080160.1
- Solanum lycopersicum: Solyc06g083600.1.1, Solyc06g083590.2.1
- Solanum melongena: Sme2.5_00827.1_g00006.1
- Solanum tuberosum: PGSC0003DMP400034979, PGSC0003DMP400034841
Sequences
CDS Sequence:
- >CA06g28250|Capsicum_annuum|B3|CA06g28250
ATGGACAGGAAGTTACATGAGCTTCATGGGAATACTAATAATCAAGATGAGAATATTAATATGGTGCAATCAGCGGATGATGATATACAAATGTTGCAGCAGCAGCCTACTGATTTTGACCCAATGGAGGATACTGATATTTGGCTGAATGAAAATTTCTCAACTGATTTTACTTCTCTTCAAGATTTTCCATGCATGTCGTCATCATCATCAACTTCTTATTCCCCTCCTACTGAATTATCCGATCCTTCTTCTGGGGTTGTACTAAAATCTGATGCTGAACAAGATTTCGACAAGAAAATCGATACAATTGGTGACCAAGAATGTCTAAATGTGATGGAGAATCTTGAATACATGGATTTAATTGATGTCAATGAATTTCTTGACCCTATGATATCTTTTCTCCATTCTGAGAATCAGAATCCCCAAGAGCAACAACAACAAGAACTAGTAGTAAAAGAAAAAGGGAAAGTGCCATTAGAAGATGATCAGCAAGTGTCTATTTTTCAAGGGGATAGTGAACTTGCACTCATGTTTTTCGAATGGCTAAAGCACAACAAAGATTACATATCTGCTGAAGACATGAGGAGTATTAAGCTCAAACGTTCAACGATTGAAAGCGCTTCGAGGCGATTGGGAAGTAACAAAGAAGGGAAAAAACAGCTGTTGAGGCTCATCCTTGATTGGGTTGAACAGCACAGATTGCAAAAGAAACAAATGACAGAAGCACAAGCCATTAACCAACAGTGTCTTCAAAACTGTGCCCCTTGTAACTTTGATCCGAATGCGTGCTTTTACCCCCCTCAATGGATGGCAAATCCGGCGTATAACGCCCCTTTTCCCGAGCCAATGCAAGGGTACATTGGTGATGCTTATTGTAATGGATCTTATTTTGCGACGCCTTTAAATCATACAGTGAATGGGGGTGTAAGTTCGCCACTTTCAGCTGAATATCAACCCATGGACACTTCTCAGTCCTGGTCTCCATCGCAATTTACTATGGCGACCGCTTCTCAGTACAATCAGTTTCCTGAGAATGATGGAACTAATAATGTTGCTATGGCTGATCAGTCCCAATCTTTATTGAGTACTCAATATGATCCGTACCAAATTTTCGATGGGAATGGTGAGGCATTGCCAAGGTTGGGCTCTTGTGCTACTAGAGAGGCTAGGAAGAACAGAATGGCTAGGCAGAGGCGGGTACGGCCGCACCATTATCGTCACCAAAATCGGAATCAAAGACAAATTAGTAATGAGAAAAGTGTAATGATGGGTGGTGAGATTAATAATTGTGCAATGACTCAAGCTAACAATCCAGGAAATTGGGTATGTTGGCCTTCTCCACCAATGGTGATGGTTCCACAACCACTTCCTTTGGAGAGGCCGGCTGTGCAAACCCCACAGAGCCATCAGAAGAATGGTTCGGCAGACAAAAAACAGGCTATTAAAACGGAGAAGAATCTCAAGTTTCTCCTGCAAAAAGTGCTGAAACAAAGTGATGTTAACAATCTAGGTAGAATTGTGTTGCCGAAGAGAGAAGCAGAACGTCATCTCCCACATCTTGAAACAAGAGATGGAATTTCAATCGCCATGGAAGACATTGGAACTTCTCGTGTTTGGAACATGAAATATCGATTTTGGCCAAATAACAAAAGCAGGATGTACCTTCTTGAAAACACAGGTGATTTTGTTAAAGCTAATGGACTTCAAGAAGGCGATTTCATTGTAATATACGCTGACATGAAGTGTGGCAAATATTTGATACGAGGAGTAAAAGTGAGGCCGAATGGACCAAAGTTGGAGGGCAAAAAACAAGCAAAGAAAAATCTTCGTAAGTTGTCATCTGCAGCTGCTATTAGCTCATCTCCAGTTGCTCAAGCAGTGAGATAA
Protein Sequence:
- >CA06g28250|Capsicum_annuum|B3|CA06g28250
MDRKLHELHGNTNNQDENINMVQSADDDIQMLQQQPTDFDPMEDTDIWLNENFSTDFTSLQDFPCMSSSSSTSYSPPTELSDPSSGVVLKSDAEQDFDKKIDTIGDQECLNVMENLEYMDLIDVNEFLDPMISFLHSENQNPQEQQQQELVVKEKGKVPLEDDQQVSIFQGDSELALMFFEWLKHNKDYISAEDMRSIKLKRSTIESASRRLGSNKEGKKQLLRLILDWVEQHRLQKKQMTEAQAINQQCLQNCAPCNFDPNACFYPPQWMANPAYNAPFPEPMQGYIGDAYCNGSYFATPLNHTVNGGVSSPLSAEYQPMDTSQSWSPSQFTMATASQYNQFPENDGTNNVAMADQSQSLLSTQYDPYQIFDGNGEALPRLGSCATREARKNRMARQRRVRPHHYRHQNRNQRQISNEKSVMMGGEINNCAMTQANNPGNWVCWPSPPMVMVPQPLPLERPAVQTPQSHQKNGSADKKQAIKTEKNLKFLLQKVLKQSDVNNLGRIVLPKREAERHLPHLETRDGISIAMEDIGTSRVWNMKYRFWPNNKSRMYLLENTGDFVKANGLQEGDFIVIYADMKCGKYLIRGVKVRPNGPKLEGKKQAKKNLRKLSSAAAISSSPVAQAVR*