Information report for NNU_017177-RA
Gene Details
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Functional Annotation
- Refseq: XP_010272400.1 — PREDICTED: B3 domain-containing protein IDEF1
- TrEMBL: A0A1U8AWJ0 — A0A1U8AWJ0_NELNU; B3 domain-containing protein IDEF1
- STRING: XP_010272400.1 — (Nelumbo nucifera)
- GO:0010262 — Biological Process — somatic embryogenesis
- GO:0010344 — Biological Process — seed oilbody biogenesis
- GO:0010431 — Biological Process — seed maturation
- GO:0010601 — Biological Process — positive regulation of auxin biosynthetic process
- GO:0045893 — Biological Process — positive regulation of transcription, DNA-templated
- GO:0048573 — Biological Process — photoperiodism, flowering
- GO:0005634 — Cellular Component — nucleus
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0044212 — Molecular Function — transcription regulatory region DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Citrullus lanatus: Cla009626
- Gossypium arboreum: Cotton_A_11338_BGI-A2_v1.0, Cotton_A_17671_BGI-A2_v1.0
- Gossypium hirsutum: Gh_D05G1528, Gh_A05G1361, Gh_A09G0695, Gh_D09G0708
- Juglans regia: Jr03_07450, WALNUT_00018762-RA
- Manihot esculenta: MANES_17G047000, Manes.17G047000.1.p
- Populus trichocarpa: Potri.004G045800.1
- Prunus mume: XP_008225116.1
- Ricinus communis: 30190.m010868
- Rosa chinensis: RchiOBHm_Chr5g0008771
Sequences
CDS Sequence:
- >NNU_017177-RA|Nelumbo_nucifera|B3|NNU_017177-RA
ATGAGTGTGTGGAGTCTATGGACATGGTGTTCAGTGCAGGCAGACGTCGTTCGTTCGTCTCTGCCACATTTAAACCAAAGCACAGAAGCGCCAAGTTTCGACCCTCCTCCGTCCCACTGGTCAGATGAGTATCCCGATACCACCACTCACCGAACATCTGTCAACCAACCCACCCCCGTCTCTACGCCCTCTCTCTCTTCTCAGCCTCTCTACTGTCATGGCCTATCTCACCGACCCTTTGCATTTCTTGACGCGTTTCTCTCATCTTTTACCCATCTGTGCTTCATACATTGGCCGTCATTTTTCTTTCATCATCACGACCACCATCATAGCCTATGGCTTTTCTTCACCTGCAACACAAGCTCCCCTCCCATTGATCAGAATCCAGAACCAGTACTCCTGCCGTCCTGCGTTTCTCCTCTCGTCATGGAGAACACAATCCCTCGGCCAGTTACAACCACCCCAACCACCTTTCCTGTTACATCTCCTCCCACCACCACTGTTGCTACCACTCTCAGTCAAGAACAGAAGCTACGAAACATTGAATATGGGAAGGAACTACAACTGGGTTTCTCCCCTCTTCCTCTTCCTCCTGCTTCTGTTTCTCCTCTCCCTCCTACAACAGTTCCTACACCAAATCATCCTTTCTCCACTCCTGAATCGCGCAGCACGGTTCCATACTCTCAGGATCATCATCATCAACACCATAATCTAAGCGAATCCCAGTATTACTCTTATGTGTTCTCTCCGGATTATGCTTCCTCTTCATCCATCTTTCCCGTGTTTCCTTTGATGGTTGATCCGAGCGTAATCGATAATGGACTACCCAGTTCGATGGTTGGAGGTCTCCTTGATGGGTACTATCCAACCGAAAAGTTCATCGACAAAGTTGGGTTGGAGAATTCTTGTTTCCTGGAATCGATGGCTCAATCCCAGGTGCAACAGAAGAGGTTATGGGGGTCGATAACAAAGGCTGCCAGAAGCAAGAGAAGGATAGCAAGGCGAATGAACTCCATCTCCTCCCCCCGAGTTGGTCCTCCGAACCAGAACTCTTCTTCCTCCTCTTCTCCCGGCTCTCCATCTTCCAACAAGAATCTTTCTTTCTCTGCCGACGCTGCTCAGAGCAACAGCAACTGCGACACCGACAGGAAGAAGAGAGAGCTTTTCACATTCACCAAACCACATAACAGAAAACTCCGACTCTTATTGCAGAAGGAACTGAAAAACAGTGATGTGAACTCCCTTGGAAGGATTATACTCCCAAAGAAAGACTCAGAGGCAAACCTGCCAACCCTCACAGTGAAAGAAGGATTCCAAATCACAGTAAGAGATTTGGCTTCTAGCAAGGTCTGGCACATGAGATACAGGTTTTGGCCAAACAATAAGAGCAGGATGTATGTTTTGGAGAATACAGGAGATTTTGTGAAGCAAAAGAGTCTCAAGACCGGAGACTCCATCATGCTATATCAAGACGAAAGCAACCAATTTGTGAGTAATCTAATCTTGCTTACTACAGTCTTCTTTCGATTAGCAGAGCTTCTTTGA
Protein Sequence:
- >NNU_017177-RA|Nelumbo_nucifera|B3|NNU_017177-RA
MSVWSLWTWCSVQADVVRSSLPHLNQSTEAPSFDPPPSHWSDEYPDTTTHRTSVNQPTPVSTPSLSSQPLYCHGLSHRPFAFLDAFLSSFTHLCFIHWPSFFFHHHDHHHSLWLFFTCNTSSPPIDQNPEPVLLPSCVSPLVMENTIPRPVTTTPTTFPVTSPPTTTVATTLSQEQKLRNIEYGKELQLGFSPLPLPPASVSPLPPTTVPTPNHPFSTPESRSTVPYSQDHHHQHHNLSESQYYSYVFSPDYASSSSIFPVFPLMVDPSVIDNGLPSSMVGGLLDGYYPTEKFIDKVGLENSCFLESMAQSQVQQKRLWGSITKAARSKRRIARRMNSISSPRVGPPNQNSSSSSSPGSPSSNKNLSFSADAAQSNSNCDTDRKKRELFTFTKPHNRKLRLLLQKELKNSDVNSLGRIILPKKDSEANLPTLTVKEGFQITVRDLASSKVWHMRYRFWPNNKSRMYVLENTGDFVKQKSLKTGDSIMLYQDESNQFVSNLILLTTVFFRLAELL