Information report for Gh_D09G0708
Gene Details
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Functional Annotation
- Refseq: XP_012484717.1 — PREDICTED: B3 domain-containing transcription factor LEC2-like
- Refseq: XP_012484718.1 — PREDICTED: B3 domain-containing transcription factor LEC2-like
- Refseq: XP_012484719.1 — PREDICTED: B3 domain-containing transcription factor LEC2-like
- Refseq: XP_012484720.1 — PREDICTED: B3 domain-containing transcription factor LEC2-like
- Refseq: XP_012484721.1 — PREDICTED: B3 domain-containing transcription factor LEC2-like
- Refseq: XP_012484722.1 — PREDICTED: B3 domain-containing transcription factor LEC2-like
- TrEMBL: A0A0D2RSI0 — A0A0D2RSI0_GOSRA; Uncharacterized protein
- STRING: Gorai.006G087600.1 — (Gossypium raimondii)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Citrus sinensis: orange1.1g039100m
- Gossypium arboreum: Cotton_A_17671_BGI-A2_v1.0, Cotton_A_11338_BGI-A2_v1.0
- Juglans regia: Jr03_07450
- Manihot esculenta: MANES_17G047000, Manes.17G047000.1.p
- Populus trichocarpa: Potri.004G045800.1, Potri.011G054000.1
- Prunus mume: XP_008225116.1
- Prunus persica: PRUPE_4G049500, Prupe.4G049500.3.p, Prupe.4G049500.2.p
- Ricinus communis: 30190.m010868
Sequences
CDS Sequence:
- >Gh_D09G0708|Gossypium_hirsutum|B3|Gh_D09G0708
ATGCATGGTGTTCTGTGCAGAATCAGCCCAAGACTAGGGCCACATTTAAACCAAAGGTGGCGCCAACACTATCTCAAGCACACTCACTGGTCAGATGGGTATCCCGAAACCACCTTTCTCCGGCCACTTGTCAGCCAACCCACCACCCCATTGGCAATCTCTCGTTACTTGACTCTCGTTGTTTCTCTTCTCTCTCTCTATTTGCAGTTTCATGGTCTTTTTCTCTCTCCACAACCGATCCCTCTGCACCACTTGACGCGTTTCTCACGCTTTTTTCACACCTGGACTCACCCTAATGGAAGCATCTTACAGCCCCATGACCTTATTGAGCCACACTTTGTTCTTACTCAAAACAGTAAAGAAGAACACACACAAAGTAGTGCACTCTCATCAACCTTCTTCTCTGATCGTAACCAGCACTGCAATCCCCTAGACTCATCATCATCACATTGCACCTTCGTCCTAATGGAGAATTCTTACATTCCCTTTTTCTCCACCACAGCCACCTCCAGCACCACCCCAATCACCACCACAACAACCATCCATTCCTCCTCAAACATGGATTGGTCTCAGAATTCGGACTTCTCCATGTTTGAACCAATGAACTCTCAGTTTCAACATCCATCACAGCTTTTGTCACCTAACCAGAGCCTGCAATTCCCATACAACCATTCCATAGAGCAGGCTCCTGTGTATCCTTTCTTTACGGGGCAAAAGGGGTTTGAATTTGGGGTACGTAAGGAACAAGAGAGAAGAACCAATGATCCTTATAGAACAAAGCTTGCAAGGATTAACAGAAAGTTGGCACGGCAAAGAAGCCTCCAAAGAAATGCTAATTCAGGGGCTTCAACACAGGTAGATGCAAGGAGACTGATAAACTCTGGTGCTGACACTGATACAAATAAAAACAAGGATAACAAAAAGGATCAATACAGGTTTTGCACACCAGATAACCAGAGACTAAGGGTGGTGCTAAAGAAAGAGCTGAAGAACAGTGATGTTGGGTCCCTTGGGAGAATAGTTCTTCCAAAGAGAGACGCAGAGGTAAACCTTCCACCACTATCTGATAAAGAAGGCATCCAAGTTATGATCAAGGATGTATACTCTAACCATATGTGGACCCTCAAATACAAGTTCTGGTCCAATAATAAGAGCAGAATGTATGTGCTGGAAAACACTGGGGATTTTGTAAAGCAAAATGGACTAGGAACTGGAGATTCCCTTACACTTTATGAGGATGAAAGCAAGAACCTTTATTTTTCTATAACAAAGGTGGCAACGGTTGCTGTCGAGTCTTCAAGCAACCAACAATACTATCATAACGTAAACAATAATGGCGAAGAAGGCAACGACAACAGCAACAACATTGGCAATATATATTTGCCATTTACATCCCAGTCTAAAGATGATGAAGCAACATCTTTAGAGTTATTTATGGAGCAACAAGAACCTAATGATTTTATCATGACTTTGCCTATGGATTCTACTTATGGTTCACATACGATGTTCCCAGAGGAAACCAGACATTTACCTAACAACGTTGGTCAAACGACATCGTTGTCGAGAAGTGTCGATGATATTTCTATCAACTTTGACGACTGCTATGGGGGTCTTGATATGTTACCTGAGGTAAATCAATACAATTTTTCATTTTGA
Protein Sequence:
- >Gh_D09G0708|Gossypium_hirsutum|B3|Gh_D09G0708
MHGVLCRISPRLGPHLNQRWRQHYLKHTHWSDGYPETTFLRPLVSQPTTPLAISRYLTLVVSLLSLYLQFHGLFLSPQPIPLHHLTRFSRFFHTWTHPNGSILQPHDLIEPHFVLTQNSKEEHTQSSALSSTFFSDRNQHCNPLDSSSSHCTFVLMENSYIPFFSTTATSSTTPITTTTTIHSSSNMDWSQNSDFSMFEPMNSQFQHPSQLLSPNQSLQFPYNHSIEQAPVYPFFTGQKGFEFGVRKEQERRTNDPYRTKLARINRKLARQRSLQRNANSGASTQVDARRLINSGADTDTNKNKDNKKDQYRFCTPDNQRLRVVLKKELKNSDVGSLGRIVLPKRDAEVNLPPLSDKEGIQVMIKDVYSNHMWTLKYKFWSNNKSRMYVLENTGDFVKQNGLGTGDSLTLYEDESKNLYFSITKVATVAVESSSNQQYYHNVNNNGEEGNDNSNNIGNIYLPFTSQSKDDEATSLELFMEQQEPNDFIMTLPMDSTYGSHTMFPEETRHLPNNVGQTTSLSRSVDDISINFDDCYGGLDMLPEVNQYNFSF