Information report for IGS.gm_21_00076
Gene Details
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Functional Annotation
- Refseq: XP_005844686.1 — hypothetical protein CHLNCDRAFT_138597
- TrEMBL: E1ZNC9 — E1ZNC9_CHLVA; Uncharacterized protein
- STRING: XP_005844686.1 — (Chlorella variabilis)
- GO:0055114 — Biological Process — oxidation-reduction process
- GO:0003677 — Molecular Function — DNA binding
- GO:0016491 — Molecular Function — oxidoreductase activity
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Brassica napus: BnaC09G0167200ZS, BnaA09G0152900ZS
- Brassica oleracea: Bo9g036780
- Brassica rapa: Bra027014
- Daucus carota: DCAR_009981
- Gossypium hirsutum: Gohir.D13G148900, Gohir.A05G293100
- Lactuca sativa: gene-LSAT_9X116880
- Manihot esculenta: MANES_03G115600
- Medicago truncatula: Medtr3g055090
- Oryza sativa: OsPAO3, OsPAO5
- Populus trichocarpa: POPTR_011G127600v3
Sequences
CDS Sequence:
- >IGS.gm_21_00076|Chlorella_variabilis_NC64A|B3|IGS.gm_21_00076
ATGGCAGGTGGCGATGAGCTTGAGTACACAAAGGTGCTGAGCGAGTCATACGTCTCCCGGAATGCCCCGCTGGGCTTTCCAGCAAGATTCCACAGGGTGTGGTTCACAGAAACCACCGATGTGCTTCTGAAGAACGAAGCTGGGGAAGCCTGGGAGGGCCGAGTGACCAAGAAGGCCGCTGACGAGAAGAAGCCGGACTCTTGCAACATCACCGGCGGGTGGGGCATCTTTGTCAAAGCAAACGGGCTGCAGGAAGGCGACGAAGTCAAGTTTCAGCACCAGCCTGCCACCAGCTCCAGTAAGGCAGCTATCCGCATCACTGTGCTCAGCAGAGGCAACACGAATGAGGCTGCGGCCAAGCGCCAGGCAGCCAAGCGCCAGGCAGCCCAGCTCGGCAAGCCCGGCCGCAAGCCGGCCTCGCCTGCGGCAGCCCGCACGCCGGGGCGCAAGCGGCCCCGCCAGGAGGCGCGCCCGCCCGAGCACCCCGCTCAGCAGCAGGCGGCGCAGCCGCGGAGGGGCCCTGGCACCGCGGCAGCGGCGGCGGCGGCGTTGGCTGCCAGAGCAGCGGCCGCAGTGGCAGCCGAGCAGCCGCCTACCCTGGCTGCTGGCGAGCGCGAATACATCCGGCACAGCCGGCAGCAGCCCGAGCAGCAGCAGCAGCAGCAAGGGGTGGAGGAGGCGGCAGCATGGCAGGCAGCAGAGCAAGAGGCAGCCGGGCGGGAGCAGCAGGAGGAGGAGGCTGTGCTCCAGGAGGAGCAGCCAGCTGAGCAGCAGGTGAAGTCTCCTTACAGCGGCTGCTACGATCTCCCGCCTGGCGAGTCATCTGACGACGCAGCGGATGCGCCGGCTGCGCCACAGGCAGCAGCGCGGGCGCCAGCAGCGGCAGCTGCGGCTGTTCCAAGCCGCGGCGAAGAGGCGGAGCGTGGGGCCAAGCGGCAGAGGCCCGCCGCTGCTGCCGCTGCTGGCGTGGTGGCGGCTGCGGCCGCTTCTGTGCAGCCTCTGGAGGCGGCTTCACACCAGGCTGAGCGTGACGCCGGCGCCGGCGGCAGCGGCGGCGAGGAGGGCGACCCACGGGAGGGCGGGCTGGCCGCTGGCGCGCCAAAGCTCACGGCCGGAGCGCTTGTGGGGCGCACCGTGCTGCTGCGCTGCCCAGCCGGCCCCGCCCTGCACAGCCGGCGGGAGTGGGTGGCGGGGCGAGTGCTGGAGCCCGTCGGCAGCAGGCCTGGCATGCTGGTGGTGCAGCTGGTGGGGGCGAACAGCCAGCAGCAGCAACACCAGGAGGGCGAGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGAGGGTCAGCCAGCCGCGGCAGCGCCAGCGGGAGGCATCGAGGAGCTGTCTTTCTTCAACCCGTCTGATGTGGCTGCGCAGCTGCCGGAGGGGCTAATCGGCTGGACAGTGAGGAAGCACTTCCCTGGGTTCGGGCCCCGCAAGTGGATTGGCAAGGTGGATGGGTTTGTTGCAGAGTGCCAGCTGTACCACATCACCTATGAGGATGGGGATGGCGAGGAGGCCGAGCTTCATGAGCTGCTGCCGGTGCTGAGAGGGCCCCATCGAGCGCAAAACGGTGCCCGGCTGGCGCCGGCTGGCGCGCCCTCCAGGCCAGCCGCCGGCGGCAAGAAACGCGGGCGGCCGCCCAAGCAGGCGCCGCCTGGCGAGCCGCAGGCCGCGGCGGCGGCCGTGGCGGCTGCCGGCCGCGGCCGCAGGGTTGCGGCCGCCGCTGGGGCGGATGCCGCGGCTGGCGGTGCGGCCTGGGTGCAGGTGGAGGCCACCCCCGTGGCGATAGCAGAGGCGGAGGAAGGAGGCTTTTATGCGGCAGGGGGCGCGGGGCACGACCGCCACGTGCTGGCTTTTGACAGGGAGGCTGGCATGGCTCGCCCGGTGGGCCCCTGGATCGTCGACCGCCACAAGGGCACTGTTCTGGGCCGCGCCGCTAGGCTGGACAAACGCCACCTGCCCGACCGCCAGCTGCCCGACGGCGGCGAGGAGGGCCGCGCCTACCGGAGCCCCTGCGTGCCCGGCTGGCTGGGGGTCAGTATTGTGGAGAGCGACGAGGAGCAGGTGTGGCATCCCGGCTACAAGGGGCAGTACCACCCTGTGTTCTGGGACTCTCACTGCGCCGTCAAGCACAAGGTCCCCAGCGCCTATACAGAGACGGTCGAAGAAGCGGCGCTCCTGTACGATCGCATGGCGCTTTCCTACTTTGGAAGCGGGGCAGATACCAACTTCCCGCCAACCGAGGAGCTGCTGGCGGAGCTCGGGGGCCAGGAGGAGGGCGCTCGCTCCCAGGTCATCCCCCTGGCCGCCCGCCTGCTGTTCATGGAGCAGAGCATTCCCGACGAGGCGATCGCCACCGATGTGTCGCAGGAAGAGTGGGATGAGTGGGAGTCGTACATCCAGGACAACCACCTGCTGCGCCGCCCCGCGGCGGACGCCCCGCGCCAGCTGGCCGCCAGGCTCAAGTGGCTGCTGCAGCAGGCGAGCGCGGCGGGGCTCCCGGGGCCTCTTGGTACCCCTTTGGTACACCCCAGCGCCCTGCTGCCGCCGTACCGCGGCGCCGCCATGCGCCGCTTCATGGCAGCCTGCGACGCCTGCACAGAGGTGGGAACCAACAAGGACCACTACGCTCCCGATGCGGCCCACTGCTTTGCCTGCGCCTCCACCGTAAAGAAGGGTGGCGGCGCCTCGTTCCGACACAGCTGCAACAAGCTATCTGCGCTGATACGAGAGCTCGAGGTGGCGGTCATCTCTCAGGACGCTCTCAGTTCTTTCGCGAGCGGCGAGGGCGAGGAGGAGGCTGCTGCGGCGGCGGACGATGAGCAGCAGGGGCTCGACGCCAAGCTCCGGCTGTGGCGCACAGGGTGCCCCGATGGCGGCCAGTCAGATGATGCCAGGGAGCAGGCAGCGGATGCGCGGCGGCAGCGGCAGCGCGGCCAGGCCGGCGGCGCCGCCTTGCCGCGGCGCGGGGCGCGGGGCGGCCGCGGCGGCCGCGGCGCCGCCGTGCGGCAGGAGAAGCCCGTCCCGCCAGGCGCGCCTCGGGTCATCGTCATCGGCGGCGGCGTGGCGGGCCTGAAGGCGGCGGCAGACCTGCAGCGCTCGGGCGCGCAGGTGACGGTGCTGGAGGCGAGGGACAGGCTGGGAGGCCGCATCCACACCCACCAGCTGGTGGCGGGGGAAGTGCGGCGGCCGGTGGACCTGGGGGCGACCTTCATCTGCGGCACCTCCCGCAGGCCACCTGTCAACCCAATGCTGGAGTTTGCGGTGGATGTGCTGGGCCTGAGCCTGCGCCCCAAGCGACGCGACGGACCTGCCGCCACCACTCTTTACGACAAGCAAGGGCTGCCCATCCCCGACGAGCAGCTGGAGGAAGCCGAGGAGAAGTACGCGGAGCTGATGGAGCAGCTGCTGGACAGGGGCGAGAAGGCGCGGGCAGGCAGCACCGAGACGCTGGCGAATGCGATCCGCAGCATCCTGGAGGACTTGCAGCTGGAGGCCATGGAGCGGCAGATCGTTGAGGCGTACCTGGTGGACCTGTACGTCACCACCACCGACCGCATGAGCCTCAAGGGCAGCGTCAGCTCCGGATACGACGGCGACCACGAGCTCGTGGTGGGCGGCTTTGGCCAGGAGGAGCCGCTGTGGGCGCACGCTGTGGTCTGCACGCTGCCCCTCGGGTGCCTGCAGAAGCAGACGGTCGCCTTCCAGCCGCCGCTGCCAGCCTACAAGCAGCAGGCGATCGACGGGCTGGGCATGGGCACAGAGAACCGGGTGGCGATGCTGTTTGAGGAGGTGTTCTGGCCGGAGGGGCCACACTTCCTGCGACCCCTGCACGGCCGCTACACCTTCTCAAACCTGCATGCGCTGGGCGTGGAGAACGTGCTGTGCGCCTGGGTGCGGCCGCAGGACATCGATGCGTACGAGGCCATGAGCGACGGCGAGGTGCTGGCGGATGTGGAGGCGGCGCTGCGTGAGATGTTTCCCAACACCTTCCGCAAGCCGATGGCTCACACCATCACCCGCTGGCAGCAGGACCCGTACTGCTACGGCGCCTACTCCTTTGTACCGCCTCACGGCCGCAAGGCATACTACGAATGGATGTCGTACCCTGTGAGCGGCGATGCGGCGGCGGATGCGAAGGCAGTGGAGCAGCGCGGGCTGCACGTCACGGCGCAGACGCGGCTGTGGTTTGCCGGCGAGGCCTCCTCCAAAGACGACGCCTACACCGCGCACGGCGCCTTTGTCACGGGCCACCACCAGGCGATCCGCATCAAGCGCTGGTGGCGGCACCACCACGAGCAGCTGGAGCGGTCGCAGCGGGAGGCGGCGGCGGCGGGGGCGGCGGCGGCGCAGGCGCGGCAGCTGGCCAGCCCGCTTCGGCGGCGGCGGGGGGGCTGCGTGGAGGCGGGCGGCGCCTCCCAGCAGTGA
Protein Sequence:
- >IGS.gm_21_00076|Chlorella_variabilis_NC64A|B3|IGS.gm_21_00076
MAGGDELEYTKVLSESYVSRNAPLGFPARFHRVWFTETTDVLLKNEAGEAWEGRVTKKAADEKKPDSCNITGGWGIFVKANGLQEGDEVKFQHQPATSSSKAAIRITVLSRGNTNEAAAKRQAAKRQAAQLGKPGRKPASPAAARTPGRKRPRQEARPPEHPAQQQAAQPRRGPGTAAAAAAALAARAAAAVAAEQPPTLAAGEREYIRHSRQQPEQQQQQQGVEEAAAWQAAEQEAAGREQQEEEAVLQEEQPAEQQVKSPYSGCYDLPPGESSDDAADAPAAPQAAARAPAAAAAAVPSRGEEAERGAKRQRPAAAAAAGVVAAAAASVQPLEAASHQAERDAGAGGSGGEEGDPREGGLAAGAPKLTAGALVGRTVLLRCPAGPALHSRREWVAGRVLEPVGSRPGMLVVQLVGANSQQQQHQEGEEQQQQQQQQQEEGQPAAAAPAGGIEELSFFNPSDVAAQLPEGLIGWTVRKHFPGFGPRKWIGKVDGFVAECQLYHITYEDGDGEEAELHELLPVLRGPHRAQNGARLAPAGAPSRPAAGGKKRGRPPKQAPPGEPQAAAAAVAAAGRGRRVAAAAGADAAAGGAAWVQVEATPVAIAEAEEGGFYAAGGAGHDRHVLAFDREAGMARPVGPWIVDRHKGTVLGRAARLDKRHLPDRQLPDGGEEGRAYRSPCVPGWLGVSIVESDEEQVWHPGYKGQYHPVFWDSHCAVKHKVPSAYTETVEEAALLYDRMALSYFGSGADTNFPPTEELLAELGGQEEGARSQVIPLAARLLFMEQSIPDEAIATDVSQEEWDEWESYIQDNHLLRRPAADAPRQLAARLKWLLQQASAAGLPGPLGTPLVHPSALLPPYRGAAMRRFMAACDACTEVGTNKDHYAPDAAHCFACASTVKKGGGASFRHSCNKLSALIRELEVAVISQDALSSFASGEGEEEAAAAADDEQQGLDAKLRLWRTGCPDGGQSDDAREQAADARRQRQRGQAGGAALPRRGARGGRGGRGAAVRQEKPVPPGAPRVIVIGGGVAGLKAAADLQRSGAQVTVLEARDRLGGRIHTHQLVAGEVRRPVDLGATFICGTSRRPPVNPMLEFAVDVLGLSLRPKRRDGPAATTLYDKQGLPIPDEQLEEAEEKYAELMEQLLDRGEKARAGSTETLANAIRSILEDLQLEAMERQIVEAYLVDLYVTTTDRMSLKGSVSSGYDGDHELVVGGFGQEEPLWAHAVVCTLPLGCLQKQTVAFQPPLPAYKQQAIDGLGMGTENRVAMLFEEVFWPEGPHFLRPLHGRYTFSNLHALGVENVLCAWVRPQDIDAYEAMSDGEVLADVEAALREMFPNTFRKPMAHTITRWQQDPYCYGAYSFVPPHGRKAYYEWMSYPVSGDAAADAKAVEQRGLHVTAQTRLWFAGEASSKDDAYTAHGAFVTGHHQAIRIKRWWRHHHEQLERSQREAAAAGAAAAQARQLASPLRRRRGGCVEAGGASQQ*