Information report for 462894080
Gene Details
Functional Annotation
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Brachypodium distachyon: Bradi3g47847.3.p, Bradi3g47847.1.p
- Panicum virgatum: Pavir.1NG331600.2.p, Pavir.1NG331600.1.p, Pavir.1KG364700.1.p, Pavir.1KG364700.2.p
- Setaria italica: Seita.1G220700.1.p
- Setaria viridis: Sevir.1G224600.1.p, Sevir.1G224600.2.p, Sevir.1G224600.3.p, Sevir.1G224600.4.p
- Zea mays: GRMZM5G834874_P01, GRMZM5G834874_P02
Sequences
CDS Sequence:
- >462894080|Eragrostis_tef|B3|462894080
ATGCAGATTGTTGAGGGTAAGGTGAAGAATATCAATACGCCCCCCGTGTTCCTTGAGAAGGAGAAGGAGAAGGAAAGGAAAAGGCCGAACAATGACAATTGTGAGAAGAACACGCGAACTGATAAGGAGGGGGTGAAGAACAAGCGAAATGACAACTATAAAGAAGGGGAGAAGAACAGGCGAACTGATAAATGTAAGGAGGGGGACAAGAGCAAGCGAACTGATAGCTATAGGGAGGGGAAGAAGAAGATATCCAATGAGGTGAATAATGGGAAGGCATCCCTTACTTCTTTTGATAAGGAGAAGAGAAAGGAAAAGCTGAAAATATCTTGTAGCAAGAAGAATATGCAGACTGAGGACGTCATGGAGGAGGTGGTGGAGAATTGGAATGACCATAGCAAGTTAAATAGCAGGAAGGTGTCATGTAAAAGGGAAAAGATAAGGAAAAGGTCAAATAATAGCAACTGCGGGAAGAAGATCCACGGTAATGGCGACGAGAGGGAGGAAACAAATATGTGGAATTGTGACTTTAAAGTGAAGGATGAGGAGGTGTCTGCAGCATTCTCTGAGAATGAGAAGAATAAGAAAAGGCCTACTAGTACTAACCGTGAGAAGAAAAAATTACAAAGTGATGTGAAAGGGACTCAGAAGCAGATGCGGGATTTGGATAGCAAGATGAGGAATGAGGAGTCTTCTGCAGCATTCTTTGAGAAGGAACATGAACAGAAAAGGCCGCACTCAACCAACAGTCAGAAGAAGGTTCAAAGAGATGATAAGAAGTGTGAAAATAATATGCAAAATGGACACTACAAGGTGAAAGATAGGAGGGTGTCCACCACATCGTTTGAGAAGGATAAGAAAAGAAAAATGTCGAGCAGTGACAAGGTTGAAAAGAAGATGAATGGAGCGTATATGGGCACGCCACTCTCGGTCAGTAAGAATAAGATGCGGAGGAATGATGGCAGGAAGAAGACAGAGCCAATCACGTCTGCTGCTAAGGAGAAGAAAAGAAGGCCCGATGGAAGCACAGAGAAGAATGCACCACATGATAGCAAGGAGAAGAAAAGGAATGTGCCATCTGATTTCAAAGAGGGTAAAATGATGGTGCCGACTGATTCTAACAATAAAAAGAGAAAGAGGGAAGAACCACATGCAGTATTCAAGAAAGAGAAGAGAATGCAGTCCGATGATAATGAGAAGAAGATTCGCAGTGGTAACAGGAACGGGAAAGAAAAGAAGAACTATGGTAGTGGTGAGAAAAAGAAGCGCAACACACCCCTCTCATTCTTCAAGGTCATATTCAACAACTTCAAGGAATCTCTGCTCATACCACCAGAAGTTGTCCCTGAATTGGAGCATTTGACTAATCATCATGTATATCTTGAAGACTCTGAGGGCAAGGTTTCAAAGGTCAGGCTGTCGGTTGTGGATGGTTCCCTTGCATTTGATCAGGGATGGAATAATTTTGCTTCTGACCATTTGATTAAATGGGGTGAATTTCTGTTGTTTGAATGCTCTGCCGAGTCAACTTCAGACTATTTTTTCGTGCGGATTTTTGGTAGAGATTCTCGTGAAAGACTGCATTTTGATGTTGGGAGGAAAAAAGAAGGTGCTCGGAAGAAAAAGATACATACTAATACACATGGTGATTTGATGTCGTTAGAAGTGAAATTAGAAGACACTGAAGGTGATTGCATTTTTTCTGGTGAATATACTGGAAGGAAAGATCCTGAAACACATCATGTGACTGTTCAAACAAAAGAAGACCCTAAAAGAGTTGAATGTATGGTTGGGTCTGGACCAGTCCCACTAGATAATATGAATGGAAATGAGGTCATTCAGCAGTGCAGAACACAGGGTATGTCTCCGATATGCAGCAAAAGAGAGATTCTGATTGTGGATTCAGAGCCATTGATACATGAAAATAATATAGCAAGGCTAACCACATCGACTGCAGATTCAAATACACAACACATGCCTGCTCATACGAACGAAGACCTTAGAAGGATTCATAGTGGGACTGGAAATGGACAATCAACTGTAATAGATGACGAGAAGGGAATTTTGCCTGGTGTGGAGTGTGGAACCAAGAGTACATCACCAAAGTGTGGCATAAAGAGAGTAGCATCAGTTGATGCAGCTCCTTTGACACATGAAAATGATTATATGTCGAAGCATGACTTAAAATTACATGATTCAGGTGAAGACTTAAGATGGAAACAAGAAATAAGTTCCATTCACTTAGAATGTACTACAGCTGCGAACAAATATAATAATCATGGAGAGATGAATATCAGTCGAGATGTGTGTAGAAAGTATGAAGCTCCTGGAGGCTTTCGGTGCTTGGAGAAGTGGAAAAGTAGAATTGTGAGCTTCCGATCTGTTCTTGATGATACTGAACTATTTAAACCTGAAAGCACACGAAAAACTGACAGCCAACCAGTTCTTGCTGTTGAGTATGATGCAGTCGGACTTAACAATGGTGACAAGTGTTTTTTGTCGAAGGACACTCATGCCTGTAGCCAACCAGTACTCACAATGCCCGTCAAAGATCCCTCAAGTCCTGATGGGGTAACCAAGTGCGAACAAGACGGGACAGAGATCAATCATAGTATCAATGGTGAAGGTACTAGTGTTGTTCAACTTCAGACAAAAAAGGAACAATTGGAAACTCTGGGGAGCATTCTAAATGGACCAGGGGACAATAACCTTAGTTGTGCGAATCTTATAGTTGTGTGTAATTCTGGTCCAGTAGAACTAAACCCTGCTCGATCTGAAGGCACTTTTGCGCTCATCGAATCACAGCCCACCGTGCATATCAAAAGTCCTTCATGTCCTGACAGGATATGTAACTTTGGGAGTAGCAGGACGGAGGTCAATGATAATGTCGACGGAGAAGCTAAACTTGAAGCAAAGATGGGTCACTTAGAGCCAATGGACACTGTTGGTAGCCAAAGTACTGACATTCCTGTGTGTGCCAACAATGTAGCTGCACGCCAATCAGACCATTGTGTCTTCAAACAGGAAGATAAAAATTCTATTGACTTTTTTACCCATGTGAAGACTGAAATTTTGACCCCTGTGAAGCCTGAAATTCTGGAGCCAGATGAGCGTTCTTTACTGAAAATCAACTTGCAATTTTGCATTCCTAATAGCACTCAGAAATTGCTTTTATCGGCAAGCACATGCTTGCATGGAACAGCTCTGCAGAGGTACACCAAGCTGTGTGGAAACCACGATTTCAGTTGA
Protein Sequence:
- >462894080|Eragrostis_tef|B3|462894080
MQIVEGKVKNINTPPVFLEKEKEKERKRPNNDNCEKNTRTDKEGVKNKRNDNYKEGEKNRRTDKCKEGDKSKRTDSYREGKKKISNEVNNGKASLTSFDKEKRKEKLKISCSKKNMQTEDVMEEVVENWNDHSKLNSRKVSCKREKIRKRSNNSNCGKKIHGNGDEREETNMWNCDFKVKDEEVSAAFSENEKNKKRPTSTNREKKKLQSDVKGTQKQMRDLDSKMRNEESSAAFFEKEHEQKRPHSTNSQKKVQRDDKKCENNMQNGHYKVKDRRVSTTSFEKDKKRKMSSSDKVEKKMNGAYMGTPLSVSKNKMRRNDGRKKTEPITSAAKEKKRRPDGSTEKNAPHDSKEKKRNVPSDFKEGKMMVPTDSNNKKRKREEPHAVFKKEKRMQSDDNEKKIRSGNRNGKEKKNYGSGEKKKRNTPLSFFKVIFNNFKESLLIPPEVVPELEHLTNHHVYLEDSEGKVSKVRLSVVDGSLAFDQGWNNFASDHLIKWGEFLLFECSAESTSDYFFVRIFGRDSRERLHFDVGRKKEGARKKKIHTNTHGDLMSLEVKLEDTEGDCIFSGEYTGRKDPETHHVTVQTKEDPKRVECMVGSGPVPLDNMNGNEVIQQCRTQGMSPICSKREILIVDSEPLIHENNIARLTTSTADSNTQHMPAHTNEDLRRIHSGTGNGQSTVIDDEKGILPGVECGTKSTSPKCGIKRVASVDAAPLTHENDYMSKHDLKLHDSGEDLRWKQEISSIHLECTTAANKYNNHGEMNISRDVCRKYEAPGGFRCLEKWKSRIVSFRSVLDDTELFKPESTRKTDSQPVLAVEYDAVGLNNGDKCFLSKDTHACSQPVLTMPVKDPSSPDGVTKCEQDGTEINHSINGEGTSVVQLQTKKEQLETLGSILNGPGDNNLSCANLIVVCNSGPVELNPARSEGTFALIESQPTVHIKSPSCPDRICNFGSSRTEVNDNVDGEAKLEAKMGHLEPMDTVGSQSTDIPVCANNVAARQSDHCVFKQEDKNSIDFFTHVKTEILTPVKPEILEPDERSLLKINLQFCIPNSTQKLLLSASTCLHGTALQRYTKLCGNHDFS