Information report for Zm00001eb246280
Gene Details
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Functional Annotation
- Refseq: XP_021315763.1 — B3 domain-containing protein Os02g0598200
- TrEMBL: A0A1D6HCB9 — A0A1D6HCB9_MAIZE; B3 domain-containing protein
- TrEMBL: A0A3L6EPY9 — A0A3L6EPY9_MAIZE; B3 domain-containing protein
- STRING: Zm00001eb246280 — (Zea mays)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Brachypodium distachyon: Bradi3g47847.3.p, Bradi3g47847.1.p
- Panicum virgatum: Pavir.1NG331600.2.p, Pavir.1NG331600.1.p, Pavir.1KG364700.1.p, Pavir.1KG364700.2.p
- Setaria italica: Seita.1G220700.1.p
- Setaria viridis: Sevir.1G224600.2.p, Sevir.1G224600.1.p, Sevir.1G224600.4.p, Sevir.1G224600.3.p
Sequences
CDS Sequence:
- >Zm00001eb246280|Zea_mays|B3|Zm00001eb246280
ATGGGAGGAGGAAACGAATTCTTGGTGGGGATGACCGGCTCTGCTCCTGATTCTGCCCGCCAGAAGCGGTGTCACGACACTGCCAACGGTGAGGTGCGGGACGGCGACACTGTGGTAAAGAACGGGAAGACGTCCGATGCTGCCTCCGTAGAGAAGAGGGAGAAAAAGGAACATCTGTTTAAATGCAGTGCCTACCATGGGAAGGATACGGACATGTGGAGTGGCGACCAGAGGATAAACAAGAGCAGGGTGCCTGCCGCATTATGTGAGCAGGGAAGGGAAATGGATGATGACCTGAACAAAACCAACAGCAAGGAGAGGATGATGGGTGTTGAACTGGACAAGGAAAAGACGATTACATCGGATGACTGCAGTAAGGTTGAGGGTAAGAAAAAGTTCAACACCGCATCCCCTGAGGAGGAGAGGAAGAAGAAACCTCACAATGCCAGCACTGGGAAGAATATGCAAAGGGATGATGACAAGGAGGTGGTAAGGATTATGAGTAACTCTGATACTAAGGTGAAGATCAAGAAGGTGTCCACCCCATTACCTAAGAAGGAGAAGAATAAGGAAAAGCTAAACAAAACCTACCGAGAGAAGAAGATGCAGGCTGCTGACAGCAAGATGCGGAGTTGTTACAGTGGAGTGAAGAAGGGGAAGGTGATACCACGAATTGTTGCACCCAGACTGGAGTATTTGACTAATCAACTTGTGTATCTTAAAGATTCAAAGGGAAAATGTTTAAAGGTCCTGGTATCGAAGGTGGTTGATTCCCTTGCTTTTGATCAGGGATGGGATGTTTTTGTCTCAAACCATTTGATTAAATGGGGTGAATTTCTGTTGTTTGAGTATATTGCTGAGCGTACATTTTCTGTGCGGGTTTTTGGTACGGATTCTTGTGAAAGACTCGACTTCAATCCTGAGAGCACAAATAAAGGTGAAACTAAGAAACAGGCATGGAGTAATATGCCACCTGATGATTTGGTCGTCACAGATGGTATTTCAGAAAACAGTGGCTACTATGTTTCTGGCGAATGTCCTAGGACCAAAGTGCCTCAAACATGTCATGTAACTTGCAATACAAAAAAAGACCCTAAACGAGTTGAACGTGTGGTTGGATCTGGACCAGTGGCACAAGATATCAGTGGTAATTTGATTGGTCCACAGTGCAAAACAAAGGGTACTCCACTGTGCAGCAAAGGAAAAACAGTAATTATGATTATAGATTCTGAAGATTCTGAACCTTCCGCGCATGAAAAAGAGGATACAATGAAGCTAGCCACATCAGGACCAGATTCAGATATAAGTCTTGTGGCTGTTAATACCAATGAGGACCCTATAAGAGCTCAAAGTGGCATTGGGAATGGACCCTCAGCTGTACTAGCTGACGAGAAGGGGAATTTCCCTGAAATTGAGTGTGGAACCAAGTGCATTTCAGCAACATGCAGTGAAGTAAAAACAGTATCTCAAATTATAAGTGCTACAGCTCTCTTAGATTTACATGATTCAGATGAAAATTTAGGCAGAAAACAAAGAACAAATGCCATTCCTTTAGATTCTAGGACAACCGCGGAAGATTATCATAATTATAGCAAGATGATCATTATCCAAAACTTTAATAGAAAATATGAAGCTCCTGGAGGTTTCCGATGCTTGGAGAAGTGGAGGAAGGATGTTGTGAACAATCAAACAGCTCTTGATTGCACTGCACCGATTAAACATGAAAACCCACAAAAAACTGACGGCATGTTGGTTGATGGTTACGGTTTGATTGAACTGAACCCAGTAGATGAGTACATTTGTTCCGAGGGAAATCATGAATGTGTCCAACCAGTATTCACAATGCCCATCAAAGAACCATCAAGTGCTGACAGAGTAATCGATTGCGGACGTGATGGGACAGAGATCAACTATAGCATCAATGAGAAAGATGGAGAGGTGGATACTAAGTGCATCCAAACAAGGCCATATGATGTCAAAGCTTCTGTGCTGTTTCATTCAAAAGAAGAAGAGTTTATTGCGGTGGTGCTTCTGTTCTACTTGAAGCAAAAGGAGAACAAACCCATGGGAAGCATTGTACATAGCCAAAGTAACAATGTCTGGTTGAGTGCAAACCCTGTAGTTGCGGGTAAATATGCTGCACTAGGACTAAACCCTAGCAGGTCTGAAGGAAGTTGTGCCTTTATTGAATCAATGTTAACAGGGTCCATTGAGAAAACCTCAAGTCCTGACGAAATATCTAAATGCAAGAATAGCATGATGGAGACTGCACATAATGTCAATGGAAAAGGTGGTGGAACTACTGCTCAATTTGAAACCAAAATGGATCAAGCGGAGCCAGCGAGGAGCGGTGTACGCAGCAAAATTTGCAACAGTGTTGTACCTGCCAACGAGTCAGAACACCGTTCCACCAAACAGGAAGGCAGAATGTCTAGTAACCGTGAGGTCCCAGAGTCTTTGTTGCCTACAAAGGACGAAATTCCGGAGCCGGATCATCATTCTCCACCAGAGATCAACTTCCAACTGTGCATTCCTGATACTACTCAGAAATGGCTTGACCTATCCAAGTCGCTTTCCAATGCAGTTAGACGACAGAGAAGGCATGACTATGATGTCATAATGCTGAAGGACCCCAAGAAGAGACTATGGCCTGTCGTTTACCACGACAGCCTGTTATTTGTGGGATTCACCGCGGGCTGGAAACATTTCGTGGCATCAAACGACCTTCGGGCTGGGGATGTTTGCGAACTTGTTAAGGAGCCAGACGATGGTGAGCCGGTGTACTCTGTCCGGATGTCTGATCACAAAATTTAA
Protein Sequence:
- >Zm00001eb246280|Zea_mays|B3|Zm00001eb246280
MGGGNEFLVGMTGSAPDSARQKRCHDTANGEVRDGDTVVKNGKTSDAASVEKREKKEHLFKCSAYHGKDTDMWSGDQRINKSRVPAALCEQGREMDDDLNKTNSKERMMGVELDKEKTITSDDCSKVEGKKKFNTASPEEERKKKPHNASTGKNMQRDDDKEVVRIMSNSDTKVKIKKVSTPLPKKEKNKEKLNKTYREKKMQAADSKMRSCYSGVKKGKVIPRIVAPRLEYLTNQLVYLKDSKGKCLKVLVSKVVDSLAFDQGWDVFVSNHLIKWGEFLLFEYIAERTFSVRVFGTDSCERLDFNPESTNKGETKKQAWSNMPPDDLVVTDGISENSGYYVSGECPRTKVPQTCHVTCNTKKDPKRVERVVGSGPVAQDISGNLIGPQCKTKGTPLCSKGKTVIMIIDSEDSEPSAHEKEDTMKLATSGPDSDISLVAVNTNEDPIRAQSGIGNGPSAVLADEKGNFPEIECGTKCISATCSEVKTVSQIISATALLDLHDSDENLGRKQRTNAIPLDSRTTAEDYHNYSKMIIIQNFNRKYEAPGGFRCLEKWRKDVVNNQTALDCTAPIKHENPQKTDGMLVDGYGLIELNPVDEYICSEGNHECVQPVFTMPIKEPSSADRVIDCGRDGTEINYSINEKDGEVDTKCIQTRPYDVKASVLFHSKEEEFIAVVLLFYLKQKENKPMGSIVHSQSNNVWLSANPVVAGKYAALGLNPSRSEGSCAFIESMLTGSIEKTSSPDEISKCKNSMMETAHNVNGKGGGTTAQFETKMDQAEPARSGVRSKICNSVVPANESEHRSTKQEGRMSSNREVPESLLPTKDEIPEPDHHSPPEINFQLCIPDTTQKWLDLSKSLSNAVRRQRRHDYDVIMLKDPKKRLWPVVYHDSLLFVGFTAGWKHFVASNDLRAGDVCELVKEPDDGEPVYSVRMSDHKI