Information report for scaffold_703332.1
Gene Details
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Functional Annotation
- Encodes HTA11, a histone H2A protein. Loss of all H2A.Z (triple mutant with HTA8 and HTA9) results in a reduction in DNA methylation of transposons but not that of genes. Loss of H2A.Z causes misregulation of many genes involved in the response to developmental and environmental cues, and that these genes tend to have high levels of gene-body H2A.Z.
Homologous
- Arabidopsis thaliana: AT2G38810
- Brassica napus: BnaC03G0220900ZS, BnaC06G0189900ZS, BnaA09G0504600ZS, BnaC08G0345800ZS, BnaC04G0323800ZS
- Brassica oleracea: Bo6g068090, Bo3g032830, Bo8g083750, Bo4g119860
- Brassica rapa: Bra014808, Bra000097, Bra003188, Bra007080
- Saccharum spontaneum: Sspon.01G0003540-2B, Sspon.01G0050850-1C
- Vitis vinifera: VIT_00s0179g00340
Gene Resources
- Pfam: PF00125 PF16211
- UniProt: D7MHI1
- RefSeq: XP_002868373.1
- EMBL: GL348719
- AlphaFoldDB: D7MHI1
- InterPro: IPR002119 , IPR007125 , IPR009072 , IPR032454
- PANTHER: PTHR23430
- SUPFAM: SSF47113
- Gene3D: 1.10.20.10
- CDD: cd00074
- eggNOG: KOG1757
- STRING: 81972.D7MHI1
- HOGENOM: CLU_062828_2_4_1
Sequences
gDNA Sequence
- >scaffold_703332.1
AGGATTAAAACTCGCTGATATGGTGCGTCGGAGGAAAGCAATCGCAATCAAAAAGCCGGACTCTTCCAGCGGTGGTTTTCAATTTTTCGAGGCAACCGAGAAGCTGGGTATCTACGATTCTGGAATTGTAAAAATGGATCGGACCATGTTGATGGTCGATGGCAAGGTGATCAGAGCCTTAGATTCGGCAGACTCAATATACCCAGCTTATTAGTTGCCTCGGAAAATCGAAAACCATTGCTGGAAGAGTCTGGTTTTCTGACAACGATCTCTTTCCTCCGACACACTAGATCCGCCAGTTTTCTTCCTTGGGATTTTGTTCCATCCTGGATCACAAACAAGAAGACAAAAACCTTCGATGAAGATCAAACAGAAGCGGAAAAGGTAGATATGAGAATCGCCTTCAAGGGGGAGAGAGGCACGAGGATCGATATGAGAATCGCCTTCAAGGGAGAGAGAGGCACGAGGATCGATGCAATGATTGGGCTTTTACCCTTTTGTGTTTTTTTTTCTAGATATAATTATTGTTTTTTGATTTGTAATTAATTCTACGAAGATACTCATTCTAACAAAAAAAAGTTTTGTTTAAGACATAGATGTTTTAAGAAATTAGTTTTTTTTTTTATCATATTTAGTTAAAAATTAGTCTAATCTTTCTACAAAGATATATCTTCTTAAACTGCAAACTTCTGAAGTCATATTCAAAATAGACTGCAAAAAAAAAAGAGATTTCTTTGCATAGTTTATGAAATGTCACATATCTATTGCTAAAGAAATTTCATTTTTTTTTGCAGTCTTAATTTTATGAAATTATAAACTGATATTGTTTCTTTGTTTATTTCAATTTCCAATAGGTCGTATTCACAGGCAACTCAAGACCAGAGTTTATGCACATGGTCAAGTTGGTGCCACTGCTTCTGTCTACACGGATTCAATCTTAGAATAGCTAACTGCAGAAGTTCTTGAGTTAGCTGGAAATGTGAGCAAAGATCTGAAAGTGAAGAGGATTACTCCAAGGCATTTGCAGTTGGCGATTAGAGGAGATGAGGAGCTTGTGACACTCATCAAAGGAACAATTGCTGGAGGAGGTGTACTGCCTCACATCCACATGTCTCATCAACAAACCCACCAAGGAGTGATTTGTTTCTAAAGTCAAATGATATGATGTGATTTGTTAGTTAAGTTGCCTATGATTTAAAAATAAGTGTTAATCTCCTTTGACACCTCTAAATGTGTAATTGCAATACTACGATACTAAATTACATTCTACGAAGTAAATCTAAAAACATCAAAAATTTATGTCATATAATTTTAATGCTAAAAATTTTAAAAAATTTCAATGTTGCTAAGTAAAGAAATAAAATATAATCCCGCGGAGTATCTCGGGTTAAATCCTAATGAGCTAGTAAAATGAGATCTTCATTTCCACCATTCTGGCCTTCGGATTTTGCTGCATCTTCAACAAGACGAAAAAACACAAACACCATAAGCTACTTAACTAGAAAATAACATCATCATATCATTTAACTTAAGAAACAAATCACTTCTTTCTGGTTTTGTTGATGAGATACTTGTGGATGTTAGGGACAACACCTCATCCACCAATTGTTCATTTGATGATTGTGTCAAGCTCCTTATCTCATGTGATCGCCAAATGCAAATGTCTTGGAGTAATCATCTTCACTTTCAGATCTTTGCTCGCGTTTCCAGCTAACACAAGAACCTATGCAGTTAGACACTCTAGGATTGAAGCCGTGTAGAAAGCAACAGTAGCACCAAGTCGACCATGTGTAGATACTCTGGTCCTGAGTTGCATGTGAATACGACCCATCAAAAACTGAAGTAAACAAAGAAATTTCATGTCTCTTTGTACTCTAATTTTATGAAATTTCACACTGATACTGTTTCTTTGTTTATTTTAGTTTCCAGTGGGTCGTATTCACAGGCAACTCAAGACCATAGTTTCTGCACATGGTAGAGTTGGTGCCACTGCTGATGTCTACACGGCTTCAATCCTTGAATACCTAACTACAAAGGTTCTTGAGTTGGCTGGAAACGCGAGCAAAGATCTAAAAGTGAAGAGGATAACTCCATGGCATTTGCAGTTGGCGATCAGAGGAGATGAGGAGCTTGACACACTCATCAAAGAAACAATTGCTGGAGGAGGTGTGATCCCTCACACCCACTAGTCTCTCATCAGCAAAACCAC
CDS Sequence
- >scaffold_703332.1
ATGGTGCGTCGGAGGAAAGCAATCGCAATCAAAAAGCCGGACTCTTCCAGCGGTGGTTTTCAATTTTTCGAGCTAACTGCAGAAGTTCTTGAGTTAGCTGGAAATGTGAGCAAAGATCTGAAAGTGAAGAGGATTACTCCAAGGCATTTGCAGTTGGCGATTAGAGGAGATGAGGAGCTTGTGACACTCATCAAAGGAACAATTGCTGGAGGAGGTGTACTGCCTCACATCCACATGTCTCATCAACAAACCCACCAAGGATTTCCAGTGGGTCGTATTCACAGGCAACTCAAGACCATAGTTTCTGCACATGGTAGAGTTGGTGCCACTGCTGATGTCTACACGGCTTCAATCCTTGAATACCTAACTACAAAGGTTCTTGAGTTGGCTGGAAACGCGAGCAAAGATCTAAAAGTGAAGAGGATAACTCCATGGCATTTGCAGTTGGCGATCAGAGGAGATGAGGAGCTTGACACACTCATCAAAGAAACAATTGCTGGAGGAGGTGTGATCCCTCACACCCACTAG
Protein Sequence
- >scaffold_703332.1
MVRRRKAIAIKKPDSSSGGFQFFELTAEVLELAGNVSKDLKVKRITPRHLQLAIRGDEELVTLIKGTIAGGGVLPHIHMSHQQTHQGFPVGRIHRQLKTIVSAHGRVGATADVYTASILEYLTTKVLELAGNASKDLKVKRITPWHLQLAIRGDEELDTLIKETIAGGGVIPHTH