Information report for RHC10H1G1341.2
Gene Details
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Functional Annotation
- Encodes a homolog of human Lysine-Specific Demethylase1. Involved in H3K4 methylation of target genes including the flowering time loci FLC and FWA. Located in nucleus. Negatively regulates root elongation. Involved in repression of LRP1 via histone deacetylation.
Homologous
- Actinidia chinensis: CEY00_Acc07494
- Capsicum annuum: T459_25488
- Daucus carota: DCAR_029206
- Glycine max: Glyma.09G185800
- Gossypium hirsutum: Gohir.D05G183500, Gohir.A05G180500
- Juglans regia: Jr11_19040
- Nicotiana attenuata: A4A49_07894
- Populus trichocarpa: POPTR_002G013100v3
- Prunus avium: Pav_sc0000367.1_g050.1.mk
- Prunus persica: PRUPE_1G356300
- Rosa chinensis: RchiOBHm_Chr6g0304051
- Sesamum indicum: SIN_1026099
- Solanum tuberosum: PGSC0003DMG400044864
Gene Resources
- Pfam: PF01593 PF04433
- UniProt: M1DVZ2
- RefSeq: XP_006359789.1
- AlphaFoldDB: M1DVZ2
- KEGG: sot:102604901
- OMA: SSRGEMF
- InterPro: IPR002937 , IPR007526 , IPR009057 , IPR036188 , IPR036388 , IPR050281
- PANTHER: PTHR10742 , PTHR10742:SF381
- SUPFAM: SSF46689 , SSF51905 , SSF54373
- PROSITE: PS50934
- Gene3D: 1.10.10.10 , 3.50.50.60 , 3.90.660.10
- OrthoDB: M1DVZ2
- SMR: M1DVZ2
- eggNOG: KOG0029
- STRING: 4113.M1DVZ2
- HOGENOM: CLU_004498_5_0_1
Sequences
CDS Sequence
- >RHC10H1G1341.2
ATGGAAACATCCGCCGGACACCCGCCGGAAACATCCCACAATGTTAACTCCGACGAAATTCTCCGTCAAGACAACCACCACAATGCCAATTTTTCCCCTCCCCAAACGACATCCGAAGCTGCCGTTTCAGACTCTCAGCTTGACGACCTTCCAAAATCATCCGAAACGAAAATATCCTCCGACTTGCCACCTCCCACCGGAGTCACCCCACCCCAAGTGAAAAGACGACGTCGTAGAAAACGATTCTTCACTGACTTGATTCCGCCCTCTGTTTCCGCCGCCGCCGTGAACGGCCTTCGTGTTCTCCGCCCTAACCCTAAACCCTCCACTGCTTATTCATATTCCGAGACGGAATTGGCCACTGGAGACGACCTCTCTAAGAATCACAATCGCCGGAGAAGGATGTCTGATCTTGCTAAAGAAGTCGATGTTGAGGCCCTAATTGCTATCTCTGTTGGGTTCCCTGTCGATTCCCTTACAGAGGAAGAAATTGAAGCTAATGTAGTTTCTCAAATTGGGGGCATTGAACAAGCCAATTACATTGTCGTGCGTAACCACATTCTGGCACGTTGGCGGTCTAATGTCACTGTTTGGCTCACAAAAGATCATGCTTTGGAATCCATACGAGCTGAACATAAAAATCTTGTGCATTCTGCTTACTCTTTTCTCCTACATCATGGGTATATCAATTTTGGTGTAGCTCCAGGGATAAAAGAAGTGAAATTTAAGCCACCTGAAGGGGCCTCAAAGGGGAATGTGATCGTTATTGGTGCGGGGCTATCGGGTTTAGTTGCTGCGAGGCAATTGATTTCTTTAGGACTTAAAGTTGTGGTTCTTGAAGGAAGGGGTAGACCTGGTGGTAGAGTGCGATCCAAGAAAATGACAGGTGGACAAAATGGGGTTGTTGCTGCTGCAGATTTAGGTGGAAGTGTATTAACTGGAATAAATGGTAATCCGTTGGGTGTTCTCGCAAGGCAGTTAGGTGTTCCACTTCATAAGGTGAGAGATATATGCCCTTTGTATTTGCCAAATGGTAGAACTGTTAATCCGGATATGGATTCCAAAGTTGAAGCATCTTTTAATAAATTATTAGATAGGGTGTGTAAACTTAGGCAGGCAATGTTGGATGAGGTTAAGAGTGTAGATGTTTCGTTAGGTACTGCATTAGAGGCGTTTAGGCATGTGTATAGAGTGGCTGAGGATCCCCAAGAGCAAATGCTTCTGGATTGGCATTTAGCCAACTTGGAGTATGCTAATGCTTCGTTAATGTCCAATTTGTCTATGGCGTTTTGGGACCAGGATGATCCTTATGAAATGGGGGGTGATCATTGCTTCATCCCTGGAGGAAATGAGAGGTTAATTCGGGCTTTAGCAGAGGACATTCCTATTTTTTATGATAGGACGGTTGAAAGTGTAAGGTATGGTACTGACGGGGTTTTAGTGTATGCTGGTGGGCAGGAATATCATGGGGATATGGTTCTATGTACAGTTCCCCTGGGAGTGCTTAAGAAGGGTAACATTGAGTTTGTACCAGAGCTTCCTCAGCGCAAGAAAGATGCAATTGAGAGATTAGGATTTGGATTGTTGAATAAAGTTGCAATTCTTTTTCCCTATGACTTTTGGGGTGGGGAGATTGATACTTTTGGACACTTGACTGATGACCCGAATATGAGGGGTGAGTTTTTTCTGTTCTATAGCTATTCTTCAGTTTCAGGTGGACCACTTCTAATTGCTCTTGTAGCTGGAGAAGCAGCAGTCAAATTTGAAAAGATGTCTCCTCTTGAATCTGTTGTGAGGGTTCTTGAAATTCTGAAGGGTATATTCAGTCTGAAAGGAATTGCTGTTCCAGATCCACTTCAAGCAGTTTGTACACGTTGGGGACAGGATCAGTTAAGTTATGGTTCTTATTCCTATGTTGCAATTGGAGCCTCAGGGGATGACTACGACATCCTTGCTGAGAGTGTTGGAGACCGAGTTTTCTTTGCAGGTGAAGCAACTAGTAAACAGTATCCTGCAACAATGCACGGGGCGTTTCTCAGTGGGATGAGAGAAGCTGCTCACATACTTAGAGTTACTGATAGGAGGATATCTCCAGCTGATACATCAAATACTTGCAGTCAGGAAAACACTAGTGTTGTTGATAAGTTCTTTGATACTCCAGACCTTAAATTTGGAAATTTCTGTGTGTTGTATGATCCTATGTCAACTGACCTGGAGTCTAATTGCTTAATACGAGTGGAATTGCAAGGGGAGAGATGTTTACATTTATATAGCCTGCTCTCCCGAAGACTAGTGCTGGAGCTAAGCAAATTAGAAGGGGATCTGAGCAGGATAGAAATGTTAACACGTGACTTTGGGTTGAAATTGGTTGGTTGGAATAATTTATCCGTTGCTGTAGGATCTCTACTCACCTCCATTGAATCGGCTAGATCAGTTTGA
Protein Sequence
- >RHC10H1G1341.2
METSAGHPPETSHNVNSDEILRQDNHHNANFSPPQTTSEAAVSDSQLDDLPKSSETKISSDLPPPTGVTPPQVKRRRRRKRFFTDLIPPSVSAAAVNGLRVLRPNPKPSTAYSYSETELATGDDLSKNHNRRRRMSDLAKEVDVEALIAISVGFPVDSLTEEEIEANVVSQIGGIEQANYIVVRNHILARWRSNVTVWLTKDHALESIRAEHKNLVHSAYSFLLHHGYINFGVAPGIKEVKFKPPEGASKGNVIVIGAGLSGLVAARQLISLGLKVVVLEGRGRPGGRVRSKKMTGGQNGVVAAADLGGSVLTGINGNPLGVLARQLGVPLHKVRDICPLYLPNGRTVNPDMDSKVEASFNKLLDRVCKLRQAMLDEVKSVDVSLGTALEAFRHVYRVAEDPQEQMLLDWHLANLEYANASLMSNLSMAFWDQDDPYEMGGDHCFIPGGNERLIRALAEDIPIFYDRTVESVRYGTDGVLVYAGGQEYHGDMVLCTVPLGVLKKGNIEFVPELPQRKKDAIERLGFGLLNKVAILFPYDFWGGEIDTFGHLTDDPNMRGEFFLFYSYSSVSGGPLLIALVAGEAAVKFEKMSPLESVVRVLEILKGIFSLKGIAVPDPLQAVCTRWGQDQLSYGSYSYVAIGASGDDYDILAESVGDRVFFAGEATSKQYPATMHGAFLSGMREAAHILRVTDRRISPADTSNTCSQENTSVVDKFFDTPDLKFGNFCVLYDPMSTDLESNCLIRVELQGERCLHLYSLLSRRLVLELSKLEGDLSRIEMLTRDFGLKLVGWNNLSVAVGSLLTSIESARSV