Information report for GSCOC_T00032587001
Gene Details
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Functional Annotation
- Encodes a homolog of human Lysine-Specific Demethylase1. Involved in H3K4 methylation of target genes including the flowering time loci FLC and FWA. Located in nucleus. Negatively regulates root elongation. Involved in repression of LRP1 via histone deacetylation.
Homologous
- Actinidia chinensis: CEY00_Acc07494
- Capsicum annuum: T459_25488
- Daucus carota: DCAR_029206
- Glycine max: Glyma.09G185800
- Gossypium hirsutum: Gohir.D05G183500, Gohir.A05G180500
- Juglans regia: Jr11_19040
- Manihot esculenta: MANES_11G098200
- Nicotiana attenuata: A4A49_07894
- Populus trichocarpa: POPTR_002G013100v3
- Prunus avium: Pav_sc0000367.1_g050.1.mk
- Prunus persica: PRUPE_1G356300
- Rosa chinensis: RchiOBHm_Chr6g0304051
- Sesamum indicum: SIN_1026099
- Solanum tuberosum: PGSC0003DMG400044864
Gene Resources
- Pfam: PF01593 PF04433
- UniProt: A0A068TX28
- EMBL: HG739089
- AlphaFoldDB: A0A068TX28
- OMA: SSRGEMF
- InterPro: IPR002937 , IPR007526 , IPR009057 , IPR036188 , IPR036388 , IPR050281
- PANTHER: PTHR10742 , PTHR10742:SF381
- SUPFAM: SSF46689 , SSF51905 , SSF54373
- PROSITE: PS50934
- Gene3D: 1.10.10.10 , 3.50.50.60 , 3.90.660.10
- OrthoDB: A0A068TX28
- STRING: 49390.A0A068TX28
Sequences
CDS Sequence
- >GSCOC_T00032587001
ATGGAAACCACCGAGCCTCGGCCCCCGACCAATGTTTCAGCTAATGCCACCGTCTCCGGCGACGGCAACGAAGATATTCCCAGCTTGAACACCATGCCTAACCATTCATCTTCTCCTAAAACGACAGCTGGCCCTACCGCTTCTGATCCTCAACCCATGGACACCTCAGAACCCGTTAATGAATCCCAACCCACCTCCAAAACTGTACCCCAAGCCGCAGCCGCTTCAACCGCTGACCCTGCCCCACCTCCGCCGAGAAAGCGGCGTCGTCGAAAGAAGCTGTTTACTGATATGATATCGACCAGCTCCGCCGCGTCCGGCCTCCGCGTCCTCCGCCCCCATCCTAAACCCTCTACCGCTTACTCCTATTCCTACTCCGAAACCGAGCTCGTGGACGAACCCGACGATGGGAAACCCCATATCCTCCATCGCCGCCGTGGCGGCAGCGGAGGAAGCAGTAGTAAAATATCCGACCTAGCTAAAGAAGTCGACATTGAAGCCCTGATTGCCATATCCGTTGGATTCCCTGTTGATTCCTTAACCGAGGAAGAAATCGAGGCCAATGTCGTCTCCCAAATCGGCGGCGCCGAGCAAGCGAATTACATTGTCGTCCGCAACCATATTCTCGCCCGGTGGCGGTCAAACGTTTCCGTTTGGCTGACGAAAGACCACGCCTTGGAGTCAATCCGGGCTGAGCATAAAGCCCTTGTCAACTCTGCGTACTATTTCCTCCTCCACCATGGCTATATAAACTTCGGGCTTGCTCCGGCGATTAAAGAAATGAAATTAAAACCCCCAGAAGGCGCCCCGAAGGCGAACGTGGTCGTAATTGGAGCTGGGCTCTCGGGTTTAGTAGCTGCAAGACAGTTAATTTTTCTGGGTTTTAAGGTTGTGGTCTTGGAGGGCCGGGCCCGGCCAGGTGGACGGGTTCGAACCAAGAAAATGCGTGGTGATAAGGATGATATTGTTGCCGCCGCAGATTTAGGCGGGAGTGTGCTGACTGGGATCAATGGGAATCCATTAGGAGTTCTTGCTAGACAGTTAGGAGTTCCTCTTCATAAGGTGAGGGATATCTGTCCTTTGTATTTGCCTAATGGTAGAACTGTTAATCCAGATATTGATTCGAGAGTGGAAGTTTCGTTTAATAAGTTGTTGGATAGAGTTTGTAAGCTTAGACAGGCTATGTTGGAGGAAGTTAGATCAGTAGATGTTTCATTAGGTACCGCATTAGAGACGTTTAGGCAAGTCTATAGGGTAGCTGAGGACCCTCAAGAAAGAATGCTCTTGGATTGGCACTTGGCCAATTTGGAGTATGCTAATGCGTCCTTGATGTCCAAGTTATCAATGTCATATTGGGATCAAGATGATCCGTATGAAATGGGAGGCGATCATTGTTTTATGCCGGGAGGTAACGAGACATTAATTCGAGTATTGGCTGAGGACCTTCCAATATTTTATAACCGTGCAGTTGACACTGTCAAGTATGGTATTGATGGGGTTTTAGTGCATGCAGGCGGGCAGGCTTATCGAGGGGATATGGTGCTTTGTACTGTACCCTTGGGGGTGCTCAAAAAGGATGTTATTCAATTTGTACCAGACCTTCCAGAGAGGAAGAGAGAGGCTATTGAGAGATTGGGGTTTGGGTTGTTGAACAAAGTCGCAATCTTGTTTCCATATGATTTCTGGGGTGGTGATATTGATACTTTTGGGCATTTGACTGACGATCCGAATACGAGAGGCGAGTTTTTTCTGTTTTATAGTTATTCTTCAGTAGCAGGAGGACCACTTCTTGTGGCTCTTGTGGCTGGAGATGCAGCACTTAAGTTTGAAATGATGTCCCCTGTTGAATCTGTCCAGAAGGTTCTTGAAATACTGAAGAGTATATTCAGCCCGAAAGGGATAGCAGTTCCAGATCCCGTTCAGGCAGTTTGCACTCGTTGGGGTCAAGATCGGTTTTCCTATGGCTCTTATTCTTATGTTGCAATTGGAGCTTCTGGAGATGATTATGATATTCTAGCAGAGAGTGTTGGAGACCGACTTTTCTTTGCAGGAGAAGCAACAAACAAGCAGTATCCAGCAACAATGCATGGAGCTTTTCTTAGTGGGATGAGAGAGGCTGCTAATATCTTGAGGGTTGCCAAGAGGCGGTCAATTGTTCCACCTGAAAGATCAAATAGTGCAGCTCTAGAAAACGGGGATATTGATAGGTTGTTTAATGCTCCAGACCTCACATTTGGTAGCTTCTCTGTGTTGTTTGATCCCAGGTCAACCGATCTAGAGTCTAATGCTGTATTACGAATTGCTTTAAAAGGTGAGAAATCTGGAACTGTTGGTATTTATCTCTACGGTTTGATCCCCAGGAAGCAGGTGATTGAACTAAGTAAGGTGGCTGGAGATCTAGACCGCTTACATATGCTAACTCGTGAGTTTCATGTGAGGTTGGTTGGGAGGAAGAGTTTAAGCAATATGGCAGAATCTCTTCTTACAGTCATTAGATCCGGCAGATTAAGTAACTTGAGTTAG
Protein Sequence
- >GSCOC_T00032587001
METTEPRPPTNVSANATVSGDGNEDIPSLNTMPNHSSSPKTTAGPTASDPQPMDTSEPVNESQPTSKTVPQAAAASTADPAPPPPRKRRRRKKLFTDMISTSSAASGLRVLRPHPKPSTAYSYSYSETELVDEPDDGKPHILHRRRGGSGGSSSKISDLAKEVDIEALIAISVGFPVDSLTEEEIEANVVSQIGGAEQANYIVVRNHILARWRSNVSVWLTKDHALESIRAEHKALVNSAYYFLLHHGYINFGLAPAIKEMKLKPPEGAPKANVVVIGAGLSGLVAARQLIFLGFKVVVLEGRARPGGRVRTKKMRGDKDDIVAAADLGGSVLTGINGNPLGVLARQLGVPLHKVRDICPLYLPNGRTVNPDIDSRVEVSFNKLLDRVCKLRQAMLEEVRSVDVSLGTALETFRQVYRVAEDPQERMLLDWHLANLEYANASLMSKLSMSYWDQDDPYEMGGDHCFMPGGNETLIRVLAEDLPIFYNRAVDTVKYGIDGVLVHAGGQAYRGDMVLCTVPLGVLKKDVIQFVPDLPERKREAIERLGFGLLNKVAILFPYDFWGGDIDTFGHLTDDPNTRGEFFLFYSYSSVAGGPLLVALVAGDAALKFEMMSPVESVQKVLEILKSIFSPKGIAVPDPVQAVCTRWGQDRFSYGSYSYVAIGASGDDYDILAESVGDRLFFAGEATNKQYPATMHGAFLSGMREAANILRVAKRRSIVPPERSNSAALENGDIDRLFNAPDLTFGSFSVLFDPRSTDLESNAVLRIALKGEKSGTVGIYLYGLIPRKQVIELSKVAGDLDRLHMLTREFHVRLVGRKSLSNMAESLLTVIRSGRLSNLS