Information report for fgenesh2_kg.6__1428__AT5G14530.1
Gene Details
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Functional Annotation
- Encodes a low molecular weight nuclear WDR protein which displays functional homology to the Swd2 protein, an essential subunit of the yeast histone methylation COMPASS complex. APRF1 acts upstream of FLC and promotes flowering under long day conditions.
Homologous
- Brassica napus: BnaA02G0054000ZS, BnaC02G0062900ZS
- Brassica oleracea: Bo2g011990
- Brassica rapa: Bra023473
- Citrullus lanatus: Cla97C10G196710
- Cucumis melo: MELO3C009987
- Cucumis sativus: CsGy3G037710
- Glycine max: Glyma.19G063300
- Gossypium hirsutum: Gohir.D10G086800, Gohir.A10G102600
- Juglans regia: Jr01_04920
- Manihot esculenta: MANES_17G112900
- Medicago truncatula: Medtr6g007797
- Populus trichocarpa: POPTR_017G071900v3
- Rosa chinensis: RchiOBHm_Chr2g0172941
- Vitis vinifera: VIT_14s0066g00720
Gene Resources
- Pfam: PF00400
- UniProt: D7M6K5
- RefSeq: XP_002873674.1
- EMBL: GL348718
- AlphaFoldDB: D7M6K5
- InterPro: IPR001680 , IPR015943 , IPR019775 , IPR020472 , IPR036322 , IPR037867
- PANTHER: PTHR19861 , PTHR19861:SF9
- SUPFAM: SSF50978
- PROSITE: PS00678 , PS50082 , PS50294
- Gene3D: 2.130.10.10
- OrthoDB: D7M6K5
- eggNOG: KOG1446
- STRING: 81972.D7M6K5
- HOGENOM: CLU_044117_1_0_1
Sequences
gDNA Sequence
- >fgenesh2_kg.6__1428__AT5G14530.1
TGATTAACATACTACTGCTTCCATTTTTTCTAATTGTCAATACATTTAAAACAATACACAAGTGTGTGAATAATGGAAACAAATATATCTTATCACTGAGAAAGAGCTTGTTGGTCGGCAGGAGGATCCGCGGGGGCTGGTGGCTCACCGTCGTTGGGGATCCAGAATGTGAGAACCGTAGAAGCAGCAACGAACATGGCTCTACGAGGTGCCCATTTCAGACACGACACTACTCCTACGTTGTTCTCCCACCTCGCCACCTGGTTTAGACAAAAAAAAACCCACTAAATTTAAATACTGTGGCAAGCATAAGACCAAAATAGTAGCTACAACATTATGAATTATTCATCATATTAAGTGAATCAGTGTCCAAGTGGTGAATGTACAATCCTAGTTGTGTTGATTATTCTGCACTTTACCTCAGATGGGTTCTCGATGTTCCACGCATGTAAGGTTCCATCACCTGATCCTGTATTTAAAAAAAATCCACTAAGCTGGTTAAATTTGGGTGTTGTGTAGATGAGTCATGATAAAAGATCATCTAGTATCATCTGGAAAAGCGTATTACCTGACAGAACATACTTGCCATCTGGTGTAAAGGTAGCTTCTATGGGTGTGCCCTGTGATGGCTCCAAACTAAAACCACATTTCTACAAAATAGCATACTTACTTTTACCAACTCAAAACCTAATGTTCTGTCTTCTTCAGGTGAAAGATAGAGAATGTGATTACCTTCTCTCCACGATATGCATCAAGAACGTAGATATTGTTATTTGTAGTGGTTAGGAGCATGGATTTTCCATCGTTACTGAATTTGATATCGTTAACCTCAGCAGTATCCCCACCCACCAGAAATGTGTCAAAGGGACCCTACATAAGAGATCAATTGGGCTTAGAAGTTAGAACTAACAAGAGCATTCGTGCGTAAGGCTGTGTGAATCATAGTAAGTAGCTAACCTTGTCATAACACCGGGAATCAAATAATTTAACAGCACCTCCTTCCATTGCAATTGCAAACACGAGGCCTTGTTGGTCATAGGCAACTGCAGGCCTACCTCGTAGATGTAGAATTCCCTATTGACTAAAAGGGTAAGCATAAATCATGAAACCATATACATTCACAGAGAGAGAGAGTGGCCCTTGCTAAATCGAGAAAACTTGTTCTAAATGTTGTGGTTCCAACATCTTCATTAAGTTTAACTTTCAAAGGTGAAATTACAAAGTTTTGGATAACAAGAAGAAAAGGCACTTTTCTGATTAAAACTCTAGCATATTCTGGCTCCATCTAGCCTTCTTTGACTGTAAGACCGGAAACTAACCTGGCAGGCATTTACACGAAGATCCCAGAGTCTGACACTTCGGTCGAGAGAACCAGACATGAAGCTATCATTAATGGGAGACATACAAAGCGATACAACCCTGAAACAGAAAAACAACTTCCATCATAAATGCAATACATACTACTAAATCCAAATCCCAATTCCAGAGGTTATAGGAGACCTGTCTTTATGCCCTTTAAAGTAGCGAAGGATCCGATTATCATACATTGAGAGATATCTCAAGGATTCTGGTACACAAGAAGAAGCATTCAAGTAAGTGAAGATGCACCATTCTTTTGATTATCCAATCTAAAGCAAGAGAAAAGGAGGACTCACCACCAGTGGACTCCAAATTGTATCGAGAAGAGCAAATTAGAGAGCTGGGATGATGGGTAAAGCATACACGATCGGTGCCATGTTTCTTATGGTATGTAATCTTGAGCTGTCTACGTTTTAACAAACATATATACAAATTGAATTTCAGTCCACAGAAATCTCAACTAATCGGTTTATCCAAAAGTTTCTTCTCGATTGTTTAAGTAAACTAGGTTTCTCTAGAACCTGATGGGCTAAGTAGAAAAAAGAAAACCTAAAAAGGAGGAATAACTGACTTAGCGTTGGCGATATCGAAGAGACGAAGTGAATCATCTTCGCTGGATGTAACCAATAGATCATCAGTCCTATGGAAACCCACCGAATGTATCTTCCCTCCCTGCAAACGAGAATTGAACGGATTAATCTCGGAAACTGGATTCTACCAAAGTTTAATCCAAAATCAAATGAGATTACATAAGACAATAATCCGTTCGTACGAAATCAGAGAAGACTGCGCCGATGGCTATCCTGCGCACCAGTCCGTCGTCTAGCTCCGTCAACGACATCGTCAAGCTCGATTAACAGTGAAGCAAGAGAAAA
CDS Sequence
- >fgenesh2_kg.6__1428__AT5G14530.1
ATGTCGTTGACGGAGCTAGACGACGGACTGGTGCGCAGGATAGCCATCGGCGCAGTCTTCTCTGATTTCGGAGGGAAGATACATTCGGTGGGTTTCCATAGGACTGATGATCTATTGGTTACATCCAGCGAAGATGATTCACTTCGTCTCTTCGATATCGCCAACGCTAAACAGCTCAAGATTACATACCATAAGAAACATGGCACCGATCGTGTATGCTTTACCCATCATCCCAGCTCTCTAATTTGCTCTTCTCGATACAATTTGGAGTCCACTGGTGAATCCTTGAGATATCTCTCAATGTATGATAATCGGATCCTTCGCTACTTTAAAGGGCATAAAGACAGGGTTGTATCGCTTTGTATGTCTCCCATTAATGATAGCTTCATGTCTGGTTCTCTCGACCGAAGTGTCAGACTCTGGGATCTTCGTGTAAATGCCTGCCAGGGAATTCTACATCTACGAGGTAGGCCTGCAGTTGCCTATGACCAACAAGGCCTCGTGTTTGCAATTGCAATGGAAGGAGGTGCTGTTAAATTATTTGATTCCCGGTGTTATGACAAGGGTCCCTTTGACACATTTCTGGTGGGTGGGGATACTGCTGAGGTTAACGATATCAAATTCAGTAACGATGGAAAATCCATGCTCCTAACCACTACAAATAACAATATCTACGTTCTTGATGCATATCGTGGAGAGAAGAAATGTGGTTTTAGTTTGGAGCCATCACAGGGCACACCCATAGAAGCTACCTTTACACCAGATGGCAAGTATGTTCTGTCAGGATCAGGTGATGGAACCTTACATGCGTGGAACATCGAGAACCCATCTGAGGTGGCGAGGTGGGAGAACAACGTAGGAGTAGTGTCGTGTCTGAAATGGGCACCTCGTAGAGCCATGTTCGTTGCTGCTTCTACGGTTCTCACATTCTGGATCCCCAACGACGGTGAGCCACCAGCCCCCGCGGATCCTCCTGCCGACCAACAAGCTCTTTCTCAGTGA
Protein Sequence
- >fgenesh2_kg.6__1428__AT5G14530.1
MSLTELDDGLVRRIAIGAVFSDFGGKIHSVGFHRTDDLLVTSSEDDSLRLFDIANAKQLKITYHKKHGTDRVCFTHHPSSLICSSRYNLESTGESLRYLSMYDNRILRYFKGHKDRVVSLCMSPINDSFMSGSLDRSVRLWDLRVNACQGILHLRGRPAVAYDQQGLVFAIAMEGGAVKLFDSRCYDKGPFDTFLVGGDTAEVNDIKFSNDGKSMLLTTTNNNIYVLDAYRGEKKCGFSLEPSQGTPIEATFTPDGKYVLSGSGDGTLHAWNIENPSEVARWENNVGVVSCLKWAPRRAMFVAASTVLTFWIPNDGEPPAPADPPADQQALSQ