Information report for fgenesh2_kg.3__2308__AT3G20810.2
Gene Details
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Functional Annotation
- JMJD5 encodes a protein which contains a jumonji-C (jmjC) domain. The jumonji-C is frequently found in proteins with histone demethylase activity. jmjd5 mutant plants have a short-period circadian phenotype.
Homologous
- Actinidia chinensis: CEY00_Acc15096
- Arabidopsis thaliana: AT3G20810
- Brassica napus: BnaC05G0378900ZS, BnaA05G0349400ZS
- Brassica oleracea: Bo5g106210
- Brassica rapa: Bra035742
- Citrullus lanatus: Cla97C03G063630
- Gossypium hirsutum: Gohir.D06G112900
- Medicago truncatula: Medtr4g066020
- Nicotiana attenuata: A4A49_40783
- Populus trichocarpa: POPTR_001G016200v3
- Prunus persica: PRUPE_6G015700
- Rosa chinensis: RchiOBHm_Chr5g0078171
- Solanum tuberosum: PGSC0003DMG400021346
- Vitis vinifera: VIT_06s0004g01630
Gene Resources
- Pfam: PF13621
- UniProt: D7KZW7
- RefSeq: XP_002883269.1
- EMBL: GL348715
- AlphaFoldDB: D7KZW7
- InterPro: IPR003347 , IPR041667 , IPR056520
- PANTHER: PTHR12461 , PTHR12461:SF105
- SUPFAM: SSF51197
- PROSITE: PS51184
- Gene3D: 2.60.120.650
- eggNOG: KOG2132
- STRING: 81972.D7KZW7
- HOGENOM: CLU_016785_0_3_1
Sequences
gDNA Sequence
- >fgenesh2_kg.3__2308__AT3G20810.2
TCACTTCCTAATATCTTTCTTTCCCTTTCCACTTTTTCGCTTACACTTTCCCCAACTCATCACTCTAAAATATCTCCCACCACATACCACTTAAGACGACCCGACCCGAAAACCCGACCCGATCCATCCCAATGTCTGGAGCTTCCACCGCTTCCTCCGGAGACCACAACAACCTCCGTCTCCCAACTCCGACGCTTGACGCCGAATTTCAATCTCTGCTGCAATCGATTTCTGCTCAAGGCGGTTACGCCTATGCTCGCATGGCGGCGTTAGCGGTGGCCGGTGACCAAAGTGCGGCGGAGGCGGCGCGTGATATGGCTTGGGAGCAACTTCACTCTGGTCCATGGCACTCAGTTCTCCCCGTGTGGCGCGACGCTTACTCAATGGCTTGTCTCCACGTCGCTAAAATTCATTTCGCCGACGGCGAGTTTGGTGAGGCGCTTGGTGCGCTTGATATGGGGCTTATCATGGGAGGGATGCTTCTCCGCAAGGATCTTCATGATTCTGTTTTGTTGGTCTCCTCTGAAGCTCGTAAGAAGACAAAGAGTCTTGAAGAAGCTTCTGGAGAGTTCAAGGGTGAGAAATTGGTCCCGGAAGTTCCCGTTGACCTCAATGAGGTGAGACATGGTTTTGCTAATCTACAAGTACTTGTAAGACTCAGATCTTGAAATCTCGATGAGCTCTAAATGAAAATGGAGATTTGTTGTGAAGAGAAATCATTACTTTTGAATTGCTTCGTGTTGATTTTGGTTTTGTTGTTGAATCTTGCAGGTGCTTAAGATTCTACCTTGCAGGTCCTTAACTTGTAGAAGAGTAGAGAAGAGGTCTGGTTTATCTTTGGAGGGGTTTCTGCGTGATTATTTTCTGTCAGGTACACCAGTTGTTATAACCAATTCTATGGCTCATTGGCCAGCCAGGACCAAGTGGAATCACTTGGACTACCTCAATGCTGTTGCTGGTAACCGCACCGTTCCCGTGGAGGTGACTGCCCATCATTTCGTCACTTAGTACTTAGTTAGGTTGTGAGTGTTGATTAGTAGTCATAAGAGGATGGTTTTAGCTTAAGGTGGCTCCTACGCTGCTCTAAGTTGTATCTTCATATTTTTTTATGGTTCTTCTTAAGAATGTTGAATCCCATAGAGTCGTGTCAACTGTATGATAAAAGGTTTAGGGTCTAGCTTAGAATAAGATTTGCATCTAGATTAGATTATCACATAAAATCAGATAGATATTGTTGCATTTTATCAAGGATAAGTTAACAATTTCACGAGCATAGGCTTTGTCATTTTTGCTTCATAGAGTTATGAGTCGTACCACTGTCTAGTCTGACCTAATAAGAATATGGGTTGGATCAGAATAATTTTTCCCTAGCTGAAAGCTGGTAAAGTTTAAAATGCTATTCAGGTGGGGAAAAACTATTTGTGTTCTGACTGGAAGCAAGAGCTTGTGACATTTTCTAAGTTCCTTGAACGGATTCGGACCAATAAATCGTCTCCAATGGAGCCTACCTATCTTGCGCAGCATCCTTTGTTTGATCAGGTAATATATGTACCGGGATGTTTGATGTATATGTTTGTCTGTACTCGGTGTGTCTCATACTGAACCTATGGTTATTGGTTTAACACAAATGGGCAGATAAATGAACTGAGAGATGATATATGTATACCTGATTACTGTTTTGTCGGTGGTGGGGAACTCCAATCACTTAATGCGTGGTTTGGCCCGGCTGGGACAGTTACTCCGTTACACCATGATCCACATCATAATATACTTGCTCAGGTAACTACGGTGAAAGATCTTTTCCTTACATGAGCTAAGCATGGCTTCTTGTCTTTGCTCGCTGTCTTTTATGCTATCCGATATATATATATATATATATATGTTCTGTAAGTGTTTAACAACCTTTTTCTTCTTTGATGTTCTTGCATAATAAAGCCTGATCATCTCGCTGGATTGAAGTCTGATGACTCTTTGACTAACCAAAGAAATCGTTTGGCCTGCAATTCATTTGGACCTTTTTAGAGTGTCTCATATGTTTCCAGTTTACGGAAACTTCTTTATTGATATGCTTTATCCTCCTACTGAAGTTTTTATATCATCTGTTCGTCAGGTTGTTGGCAAGAAGTATATAAGGCTTTACCCATCCTCCCTACAAGACGAACTTTACCCTTACTCTGAGACAATGCTCTGCAACTCTAGCCAGGTAAGATTTGTCATTCCAAAGTCAAATCTGATTTTGGATTAAACAAACATAAAACTGGAAGCTAACTCGATTTCCAAAACTGGTTGGTTTCAAACTTTGGTTGAAGGTTGATCTAGACAATATCGACAAGACCGAGTTCCCAAAGGCAACGGAGTTGGAGTTTATGGATTGTATTCTAGAAGAAGGTGAAATGCTGTACATCCCTCCCAAATGGTGGCACTATGTCAGGTCCTTAACAATGAGTTTCTCGGTTAGCTTCTGGTGGAGCAATGAAACAGATCCTTCTAGCTCGTAGCGAAAGGAGTTACTATTAATCTCTGTTTCAGGGTCTGTGTCTTATAGACACAATCATGTAAGAAGAAAAGAAACAATTGCTCCGAGCATGAAGATGTTTGTTTGGTTTACGTCTATGTTGTAAAAGACAATTGAGAGCTCTTTGGTACAGACATTTTCTAGGTATTTCATATTTGTAATGTTTGTCTTTTCTTCAAGTAAGAAAAAGGTTTAATCAAAATCTACTCTTC
CDS Sequence
- >fgenesh2_kg.3__2308__AT3G20810.2
ATGTCTGGAGCTTCCACCGCTTCCTCCGGAGACCACAACAACCTCCGTCTCCCAACTCCGACGCTTGACGCCGAATTTCAATCTCTGCTGCAATCGATTTCTGCTCAAGGCGGTTACGCCTATGCTCGCATGGCGGCGTTAGCGGTGGCCGGTGACCAAAGTGCGGCGGAGGCGGCGCGTGATATGGCTTGGGAGCAACTTCACTCTGGTCCATGGCACTCAGTTCTCCCCGTGTGGCGCGACGCTTACTCAATGGCTTGTCTCCACGTCGCTAAAATTCATTTCGCCGACGGCGAGTTTGGTGAGGCGCTTGGTGCGCTTGATATGGGGCTTATCATGGGAGGGATGCTTCTCCGCAAGGATCTTCATGATTCTGTTTTGTTGGTCTCCTCTGAAGCTCGTAAGAAGACAAAGAGTCTTGAAGAAGCTTCTGGAGAGTTCAAGGGTGAGAAATTGGTCCCGGAAGTTCCCGTTGACCTCAATGAGGTGAGACATGGTTTTGCTAATCTACAAGTACTTGTGCTTAAGATTCTACCTTGCAGGTCCTTAACTTGTAGAAGAGTAGAGAAGAGGTCTGGTTTATCTTTGGAGGGGTTTCTGCGTGATTATTTTCTGTCAGGTACACCAGTTGTTATAACCAATTCTATGGCTCATTGGCCAGCCAGGACCAAGTGGAATCACTTGGACTACCTCAATGCTGTTGCTGGTAACCGCACCGTTCCCGTGGAGGTGGGGAAAAACTATTTGTGTTCTGACTGGAAGCAAGAGCTTGTGACATTTTCTAAGTTCCTTGAACGGATTCGGACCAATAAATCGTCTCCAATGGAGCCTACCTATCTTGCGCAGCATCCTTTGTTTGATCAGATAAATGAACTGAGAGATGATATATGTATACCTGATTACTGTTTTGTCGGTGGTGGGGAACTCCAATCACTTAATGCGTGGTTTGGCCCGGCTGGGACAGTTACTCCGTTACACCATGATCCACATCATAATATACTTGCTCAGGTTGTTGGCAAGAAGTATATAAGGCTTTACCCATCCTCCCTACAAGACGAACTTTACCCTTACTCTGAGACAATGCTCTGCAACTCTAGCCAGGTTGATCTAGACAATATCGACAAGACCGAGTTCCCAAAGGCAACGGAGTTGGAGTTTATGGATTGTATTCTAGAAGAAGGTGAAATGCTGTACATCCCTCCCAAATGGTGGCACTATGTCAGGTCCTTAACAATGAGTTTCTCGGTTAGCTTCTGGTGGAGCAATGAAACAGATCCTTCTAGCTCGTAG
Protein Sequence
- >fgenesh2_kg.3__2308__AT3G20810.2
MSGASTASSGDHNNLRLPTPTLDAEFQSLLQSISAQGGYAYARMAALAVAGDQSAAEAARDMAWEQLHSGPWHSVLPVWRDAYSMACLHVAKIHFADGEFGEALGALDMGLIMGGMLLRKDLHDSVLLVSSEARKKTKSLEEASGEFKGEKLVPEVPVDLNEVRHGFANLQVLVLKILPCRSLTCRRVEKRSGLSLEGFLRDYFLSGTPVVITNSMAHWPARTKWNHLDYLNAVAGNRTVPVEVGKNYLCSDWKQELVTFSKFLERIRTNKSSPMEPTYLAQHPLFDQINELRDDICIPDYCFVGGGELQSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYPSSLQDELYPYSETMLCNSSQVDLDNIDKTEFPKATELEFMDCILEEGEMLYIPPKWWHYVRSLTMSFSVSFWWSNETDPSSS