Information report for fgenesh1_pm.C_scaffold_6000163
Gene Details
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Functional Annotation
- CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.
Homologous
- Arabidopsis thaliana: AT5G02840.2, AT5G02840.1, AT5G02840.3
- Brassica napus: BnaA10G0294200ZS, GSBRNA2T00136500001, GSBRNA2T00049249001
- Brassica oleracea: XP_013610517.1, XP_013610518.1, XP_013625291.1
- Brassica rapa: XP_009122748.1, XP_009122749.1, Bra009562, XP_009130739.1, Bra005751
Gene Resources
- Pfam: PF00249
- UniProt: D7M7W6
- RefSeq: XP_002870992.1
- EMBL: GL348718
- AlphaFoldDB: D7M7W6
- InterPro: IPR001005 , IPR006447 , IPR009057 , IPR017884 , IPR017930
- PANTHER: PTHR12802 , PTHR12802:SF98
- SUPFAM: SSF46689
- PROSITE: PS51293 , PS51294
- Gene3D: 1.10.10.60
- CDD: cd00167
- eggNOG: KOG0724
- STRING: 81972.D7M7W6
- HOGENOM: CLU_052430_0_0_1
Sequences
gDNA Sequence
- >fgenesh1_pm.C_scaffold_6000163
TGACTTCAAGCAATCCGGTGGTCGCCGAAGTACTACCGTCGGAAACTTCTACAGATGCTACAGAGACGACGTTGACAACGACGGAAGCTGGGGAAGCACCGGAGAAGAAGGTGAGGAAAGCTTACACAATCACCAAGTCTAGAGAGAGTTGGACTGAAGGCGAACACGATAAGTTTCTGGAAGCTCTTCAATTGTAATTTTACTTTCTTCCACCAGCAATTTGGTTTACTGTTTCTGTGCGTTTCTGGAAGCTCTAATTTTAGCTGAATTTTGCGTAATTTCGCTTAATTTGCTTCATCTATGATAAATTATACTACTTGATCCGTGAAGTTGGCCCATTTGTTAAAATGTTATGTTAGGGTTGATAAAGTGATAAACTTTTATCAGATCGAAGTTTGGTTATGTGGTAGATTCATCTGGAGTTTTTGCCTATGTAACTGGATTCTGCAGAAGCAACAATGTCTTTTTTGATTGGTTAGGTTAGATTGTATATTAGATAGACCAGAGTTTATATTAATAGCTGATGAATGTTTTTTCTCATAAACCCGAAGTATAGCTTAAGCATATTTTAGGTTGCCAAAATGATTCAATAGAGAGGACTTGGCATCTGGTTTCTGCATAAAAAGTGGGATTCTTCAGAAATCGTATCTTTCTTTATTGAAAATATTCAACATGAGAACTGAAAAAGCTTCATACAAGTCAGCTTTTTGAGCTATGCATGAAACCAATTTCCAATAAGTCCTAAACTACAGGTCAGAATTTGGTAATGGATCGTTACTTCCAAATGTTACATTGCTCTTTTGTGTGTGAAAGGCTTCTCTCTCTTTTTCTGAAAAAGAATCTTACTTTGTTGCTGACAATTTTCTTGTGTCCTTAGGTTTGATCGTGACTGGAAAAAGATAGAAGATTTTGTTGGTTCAAAGACAGTCATTCAGGTTTGAGATCAGCTTCTTTGGATTTTTGGTTTAATATACAACCTTGGCACACTTCTCCACTCAATCTTCCTGTGCCTGTTTGATTTACTGCAGATCAGGAGCCATGCCCAAAAATACTTTCTAAAGGTCCAGAAAAATGGGACTTTAGCACATGTGCCACCCCCTAGGCCTAAGCGCAAAGCTGCTCATCCATATCCTCAAAAGGCATCGAAGAATGGTTAGTTCTATTGTAATAGATATTACTTTGGGTGGACAGATGGAGTAACATTTAATTAATCTGAGTTCAACTCAAATCTGCAGCTCAAATGTCGCTACACGTTTCCATGTCCTTTCCTACTCAAATAAATAACCTGCCTGGATATACTTCATGGGATGATGATACCTCTGCATTGCTAAACATAGCCGTAACTGGGGTTATTCCACCAGAAGATGAACTTGAACTTGATACCCTTTGTGGAGCAGAAGGCATGCGTTCTCATCTGTACTCAGTTTTTGTGTTTTGTTTTGGTATTCGAGTTACTCTATCTGCTGAAGTGTCATATGCTAAATGCGGCTTACAATATCATTGTTTCAGTTGTTGTTGGATCAAATGGCATGATAAGTGAAACTAGTCCTTCAGCATCTGGTATTGGAAGCTCAAGCAGAACACTATCAGATTCTAAGGGTTTAAGAGTGGTGAAACAAGCTCCCTCAATGCATGGTAATTATCTGAACAATTGAGGGACTATTTCTGAGTTTTCATTTTATGGTGGACACTGTTATAATGGTTGCTTTGCAGGTCTTCCTGATTTTGCTGAGGTTTATAACTTCATTGGGAGTGTCTTCGATCCTGACAGCAAAGGCCGCATGAAAAAGCTCAAGGAAATGGATCCTATAAATTTTGAAACTGTGAGTTGGAGCTTACTTGCCTTTAGATTAAATGATGTGTGTGGCAGCATATCCATCATTTATGCTTCTACTTGAATGAGGCTTCTTCTTTGAGCTCCCTTTCTGCTACCGTACTTAGGCTTTTTGGTGTTTCCAACTCGTGAATCTATATCTTCTCTTACAGCTGAATTTAATAAAGGATGTATCTATAGATTCCGTTTCAAAATTTGATTGGTACCATGATTCTATGGAGATGTTGGTCCAATAATGGGGTTTTACAATCATGGGTCAGTTTTTAGGTGTCATGGTACCTATTTGTAGCTGTCAGTGATTGTTCTTTTTCCAGTATCCGTCACTAATCACAGTTTGTCTTTCAGGTTCTGCTGTTGATGAGAAACCTCACAGTGAACTTGTCAAACCCTGACTTCGAACCTGCTGTAAGTGTTAATTTTATCATTACTCTGTGATCGTTGAGCATGTGAGGCACATTTGTCTTTTCGTGTTAAGACTGAGTGGAAAAAAGTCTCTTACAGCTAACAGATCTACTGACTATCTGCCTTGAAATTTAACTAAAGAATTTAAAACTAGTTCGCCCTTAGTTTGTGTTACTTCTTTAACCACTCCAATGATTAAATGAAGATTGTTGTGCTCTTTGAGATATATATCTCTTATATTCACACATCAACTGTTGGTTCTGGATTTATTTCTTGGAACAAATGTAATCTAACCATAACTTAGTCTGAATATGTTGATGCTGCAGAGGAAGGTCATGAACACTTGAGCTCTTAG
CDS Sequence
- >fgenesh1_pm.C_scaffold_6000163
ATGACTTCAAGCAATCCGGTGGTCGCCGAAGTACTACCGTCGGAAACTTCTACAGATGCTACAGAGACGACGTTGACAACGACGGAAGCTGGGGAAGCACCGGAGAAGAAGGTGAGGAAAGCTTACACAATCACCAAGTCTAGAGAGAGTTGGACTGAAGGCGAACACGATAAGTTTCTGGAAGCTCTTCAATTGTTTGATCGTGACTGGAAAAAGATAGAAGATTTTGTTGGTTCAAAGACAGTCATTCAGATCAGGAGCCATGCCCAAAAATACTTTCTAAAGGTCCAGAAAAATGGGACTTTAGCACATGTGCCACCCCCTAGGCCTAAGCGCAAAGCTGCTCATCCATATCCTCAAAAGGCATCGAAGAATGCTCAAATGTCGCTACACGTTTCCATGTCCTTTCCTACTCAAATAAATAACCTGCCTGGATATACTTCATGGGATGATGATACCTCTGCATTGCTAAACATAGCCGTAACTGGGGTTATTCCACCAGAAGATGAACTTGAACTTGATACCCTTTGTGGAGCAGAAGGCATGCGTTCTCATCTGTACTCAGTTTTTGTGTTTTGTTTTGTTGTTGTTGGATCAAATGGCATGATAAGTGAAACTAGTCCTTCAGCATCTGGTATTGGAAGCTCAAGCAGAACACTATCAGATTCTAAGGGTTTAAGAGTGGTGAAACAAGCTCCCTCAATGCATGGTCTTCCTGATTTTGCTGAGGTTTATAACTTCATTGGGAGTGTCTTCGATCCTGACAGCAAAGGCCGCATGAAAAAGCTCAAGGAAATGGATCCTATAAATTTTGAAACTGTTCTGCTGTTGATGAGAAACCTCACAGTGAACTTGTCAAACCCTGACTTCGAACCTGCTTCTGAATATGTTGATGCTGCAGAGGAAGGTCATGAACACTTGAGCTCTTAG
Protein Sequence
- >fgenesh1_pm.C_scaffold_6000163
MTSSNPVVAEVLPSETSTDATETTLTTTEAGEAPEKKVRKAYTITKSRESWTEGEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTLAHVPPPRPKRKAAHPYPQKASKNAQMSLHVSMSFPTQINNLPGYTSWDDDTSALLNIAVTGVIPPEDELELDTLCGAEGMRSHLYSVFVFCFVVVGSNGMISETSPSASGIGSSSRTLSDSKGLRVVKQAPSMHGLPDFAEVYNFIGSVFDPDSKGRMKKLKEMDPINFETVLLLMRNLTVNLSNPDFEPASEYVDAAEEGHEHLSS