Information report for Ccrd_019887
Gene Details
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Functional Annotation
- Encodes a homolog of human Lysine-Specific Demethylase1. Involved in H3K4 methylation of target genes including the flowering time loci FLC and FWA. Located in nucleus. Negatively regulates root elongation. Involved in repression of LRP1 via histone deacetylation.
Homologous
- Actinidia chinensis: CEY00_Acc07494
- Capsicum annuum: T459_25488
- Daucus carota: DCAR_029206
- Glycine max: Glyma.09G185800
- Gossypium hirsutum: Gohir.D05G183500, Gohir.A05G180500
- Juglans regia: Jr11_19040
- Lactuca sativa: gene-LSAT_9X116880
- Nicotiana attenuata: A4A49_07894
- Prunus avium: Pav_sc0000367.1_g050.1.mk
- Prunus persica: PRUPE_1G356300
- Rosa chinensis: RchiOBHm_Chr6g0304051
- Solanum tuberosum: PGSC0003DMG400044864
- Vitis vinifera: VIT_03s0017g01000
Gene Resources
- Pfam: PF01593 PF04433
- UniProt: A0A103Y3G8
- EMBL: LEKV01002681
- AlphaFoldDB: A0A103Y3G8
- OMA: SSRGEMF
- InterPro: IPR002937 , IPR007526 , IPR009057 , IPR036188 , IPR036388 , IPR050281
- PANTHER: PTHR10742 , PTHR10742:SF381
- SUPFAM: SSF46689 , SSF51905 , SSF54373
- PROSITE: PS50934
- Gene3D: 1.10.10.10 , 3.50.50.60 , 3.90.660.10
- STRING: 59895.A0A103Y3G8
Sequences
CDS Sequence
- >Ccrd_019887
ATGGAAACGACGGAATCCAGAGCCGACGCCTCCGACAACCCCAACAATGGCTCCTCCGGCGACGACAACACTTCTCTCGAAAACAACCATCCTCCTCCCCTCTTGCCTCCAACCTCTGCTCCTTCCCTTGTTGGTACGGAGTCGGACAACATATTTCCGGACTCAACCCTCCAAACCACCGGCGAATCAATTGAACTTCCGTTACCAGCTCCAGACAACGCCGACGCGGGTCTACCTGCACCACGAAAACGACGTCGTAGAAAGAAGCAATTCCCGGAGATGATATCCTCCGCCGCTGCCGTCAACGGTCTCCGCGTTATTCGCCACAAATCCGGTAACAGATCAGCGGAAGAAATAGACGGATACGGAGACGATGATCCGTCGCGTCGCCGGAGGATATCGTCGGATCTGGACGTTGAATCGCTAATTGCGATATCAGTCGGATTCCCTGTCGATTCTTTGACTGAAGAAGAGATTGAAGCTAACGTCGTCAAAACAATCGGCGGAACTGACCAATCGAACTACATCGTCGTTCGCAACCACATTCTCGCACGGTGGCGATCAAATGTTGACATTTGGATGACCAGAGACCATGCATTCGAGTCTATACGAGTCGAACATACTAACCTGGTCGACTCAGCATACTCGTTTCTGCTGGAACACGGTTACATCAACTTTGGCCTTGCCGCCGCCGTGAAGGAAGCCAAATTGAAGTCACCTGAGGGTTCTTCCAGAGGTGACGTCATCGTAATTGGCGCCGGACTCGCTGGACTGGTAGCGGCCAGACAATTGATCTTTCTAGGGTTTAAAGCGGTGATTCTAGAAGGCAGGACGAGGCCAGGCGGTCGTGTTCGCACGAAGAAAATGTCTGGTGGCGACTGCGTGGCCGCAGCAGACCTAGGCGGCAGCGTACTCACCGGAATCAATGGCAATCCACTGGGAGTTCTAGCGAGGCAACTAGGGTTTCCCCTTCACAAAGTAAGAGACATTTGCCCTCTTTACCTTCCCAATGGAAAAACTGTAAACCCTGAAATTGATTCAAAAGTTGAAGCATCATTCAATAAATTGCTAGATAGGGTTTGCAAGCTCAGGCAGTCGATGATGGAGGAAGCCAAATCCATTGATGTTCCATTAGGTACAGCTTTAGAAGCTTTCAGACAAGTTTACAGGGTTGCAGAGGACCCTCAAGAAAAAATGCTATTAGATTGGCACTTAGCAAATTTAGAATATGCAAATGCAACATTAATGTCAAATTTGTCAATGGTTTTCTGGGATCAAGATGATCCATTCGAGATGGGTGGTGATCATTGTTTCATCCCGGGAGGAAACGATAGGTTTATCAGAGCATTAGCTGAAAATCTGCCCATTTTTTACAATCGAACAGTAGAAAGTATAAGATATGGATCTGATGGGGTCTTAGTCTATGCTAATGGGAAAGAATATCATGCTGACATGGTTCTCTGCACAGTCCCGTTAGGCGTTCTCAAGAAAAGATCAATCGAATTTGTCCCAGATCTTCCTCAAAGGAAGAAGGATGCAATCGAGAGACTAGGCTTTGGGTTATTGAACAAAGTTGCACTCTTGTTTCCTTATGATTTCTGGGGAGGAGAGATCGACACGTTTGGGCATTTATCAGATAAATCGAGTATGAGAGGTGAATTCTTCTTGTTCTATAGCTATTCATCTGTATCAGGCGGGCCGCTTCTTGTGGCTCTGGTAGCAGGAGAAGCTGCAATACAGTTTGAACAGATGTCTCCCGTGGAATCCGTTAAGAAAGTTATGGAGATTCTGAAAGGGATCTTCAATCCGAAAGGCATTGCTGTTCCAGACCCACTTCAGGTTATATGCACTCGGTGGGGCCAAGATCAGTTCACTTACGGGTCTTACTCTTATGTTGGAATTGGTTCATCTGGAGATGATTATGACATACTTGCTGAAAGCATCGGAGATGGCAGGGTTTTCTTTGGTGGAGAAGCAACAAACAAACAGTATCCAGCAACAATGCATGGAGCTTTCCTTAGTGGGTTGAGAGAAGCTGCTAATATGCTAAGAGTTGACAAAAGGAGAAGGTCAAAGTCAAACAACACAAACAGGTCACTAACTTTCCCAGAAAAGAAACTGTTTGAAAACCCTGATTCTAGTTTTGGGAACCTCCGTGTTTTGACTGATCTGGGGTCAGTCAATCTTGAATCCAGTTTCTTTGTTACGAGTTGGATTCAAATGGAAATAACTTAG
Protein Sequence
- >Ccrd_019887
METTESRADASDNPNNGSSGDDNTSLENNHPPPLLPPTSAPSLVGTESDNIFPDSTLQTTGESIELPLPAPDNADAGLPAPRKRRRRKKQFPEMISSAAAVNGLRVIRHKSGNRSAEEIDGYGDDDPSRRRRISSDLDVESLIAISVGFPVDSLTEEEIEANVVKTIGGTDQSNYIVVRNHILARWRSNVDIWMTRDHAFESIRVEHTNLVDSAYSFLLEHGYINFGLAAAVKEAKLKSPEGSSRGDVIVIGAGLAGLVAARQLIFLGFKAVILEGRTRPGGRVRTKKMSGGDCVAAADLGGSVLTGINGNPLGVLARQLGFPLHKVRDICPLYLPNGKTVNPEIDSKVEASFNKLLDRVCKLRQSMMEEAKSIDVPLGTALEAFRQVYRVAEDPQEKMLLDWHLANLEYANATLMSNLSMVFWDQDDPFEMGGDHCFIPGGNDRFIRALAENLPIFYNRTVESIRYGSDGVLVYANGKEYHADMVLCTVPLGVLKKRSIEFVPDLPQRKKDAIERLGFGLLNKVALLFPYDFWGGEIDTFGHLSDKSSMRGEFFLFYSYSSVSGGPLLVALVAGEAAIQFEQMSPVESVKKVMEILKGIFNPKGIAVPDPLQVICTRWGQDQFTYGSYSYVGIGSSGDDYDILAESIGDGRVFFGGEATNKQYPATMHGAFLSGLREAANMLRVDKRRRSKSNNTNRSLTFPEKKLFENPDSSFGNLRVLTDLGSVNLESSFFVTSWIQMEIT