Information report for Bra037742
Gene Details
Functional Annotation
- Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Involved in shade avoidance response. Protein abundance is negatively regulated by PhyB.
Homologous
- Brassica napus: GSBRNA2T00045066001, BnaA04G0273100ZS, GSBRNA2T00140275001, GSBRNA2T00044478001, Bnascaffold0026G0060200ZS, GSBRNA2T00084756001, BnaC04G0590800ZS, GSBRNA2T00139104001, GSBRNA2T00075487001
- Brassica oleracea: XP_013632091.1, Bo4g192880, XP_013632092.1, XP_013622129.1, XP_013622128.1
- Raphanus raphanistrum: RrC2388_p6
Gene Resources
- Pfam: PF00010
- UniProt: A0A078GV37
- EMBL: LK032253 , LR757169 , LR758392 , LR759351
- AlphaFoldDB: A0A078GV37
- OMA: NIEDYEC
- InterPro: IPR011598 , IPR036638 , IPR044273 , IPR047265
- PANTHER: PTHR46807 , PTHR46807:SF7
- SUPFAM: SSF47459
- PROSITE: PS50888
- Gene3D: 4.10.280.10
- SMR: A0A078GV37
- CDD: cd11445
- STRING: 3708.A0A078GV37
Sequences
gDNA Sequence
- >Bra037742
TGGAACATCAAGGTTGGAATTTTGAGGAGAATTACAATTTGTCCAACAATAGGAGACCTTTAAGGTATATTATGTTTAATCTAACTATTCATTTTGCATCTTTTTGAAAAATCTATATAATAGTATCCTGAGTGTATATATTTTGGAGTTTTGAGGAGAATTACAATCTGTTCAATAATAGAAGATTTATAAGGTAATATAATGTTTAATCTAATTTATTCATTAATTAAAAAGGACTATACAATAGTCCCTGAGTGTGTATATTTGTAGGCCACAAGATGAACTAGTAGAGTTGTTATGGCGAGATGGGCAAGTGGTTCTACAGAGCCAAACTAACAGAGAGCAAACCCAAGCCCAAACTGTGAAACATGATCATCATCAAGAAACCCTAAGATCCCAAACATTTCTTGACGATCAAGAAACCGTCTCTTGGCTACAATACCCTCCATATGAAGACCAATTCATAACCGACGGCTTCTCATCTCATTTCTTCTCAACCGGTAATCCCCTGGAGAGACCAGCCCCAGAGACGGTTAAGCACGAGGCCGGTCCTGACCCTCCAGATCAGGCCATGCCTCCTCCTAAGTTTAGGTTAACGAATTCATCATCAAGTGTCAAAGAACTAGGAAAGGAACAATACTCGGTGGTGACCGTTGGACCGAGCCATTGCGGAAGCAGCCAATCTCATAACAATCTTGATGTCTCAATGCGTCATGATCGGAGCAAAACTGTCAATGAAAGGCTTTACCATAACGCAGGTTCATCATCAGGTGGCTCCTCTGGTTGCAGCTTTGGCAAGAACATCAAAGAAATGGCTGGCGTACAAAGCATTACAACAGACCGTAAGAGAAAACATATAATAGACACTGATGGATATGTGTCTCAGTCAGATGTATGTTTTATTTTTTAGCTCATAATGTTAAGTTCTTGAAACGTGTTTCCGTACATTGCTCATATTTTTTTTATGTTTTATTTGGTTTACATTGCTCATATTTCTTGAAACGTTTTACAGGTAATAGGTAACAAATCGAACCAACCATCAGGATCAACGCGCAGGAGTCGAGCAGCTGAAGTTCATAATCTCTCCGAAAGGGTACTTCATCGGTTCGTCTAAATATAATTACTTTTGTCAAAAAAAGCTATATATAATTATGTATGATATATATATTTTTTTGATCAAAATTATGTATGATATATATATAGTAATTAATGTTAGTAGATTGTATATTTGGACAAAGAGAAGAAATATAAAACTGTTATGTGTTAATTAAAATAGAGGAGAAGAGATAGGATCAATGAGAGAATGAAGGCTTTGCAAGAACTAATACCTCACTGCACTAAAGTAAGTTTTTTTTTTTGAACATTAGCACTAAAGTAAGTTTTTTTAATATGATACGGAGATTGATTGATTAAATTGAAAAACTTGCTATTAATTTTTTTTTTTTTTTTGCAGACCGATAAAGCATCCATTTTGGACGAAGCCATAGACTACATGAAGTCACTTAAGTTACAACTTCAAGTTATGTGGATGGGGAATGGAATGGCTGCTGCTGCGACAGCTCCGATGATGCTCCCTGACGTACAACCTCAGCCGTTCATCCGCCAGATGCAGAGCCCGGTACAGCTGCCTCGATTTCCGGTTATGAACAATCCCGGTATAGTTTGTCAAAACCCGGTACAAAACCAAGTTTTCTCCAATCGGTTTGATAGATACATTGGCGTATTCCCACAGATGCAGGCTGCGTCTCAGGTAAGGCTCATACGACGTAGACTATTTACTTGAGTGTTATTGAGCATCAACGACGTCGTCTGCTTTAGTGCTAACTGCTAAACGACTTATGATGATTTGACACGTTGTGGTTTGATATTATACGCAGCCGATGGCGATGCTGAGATTTGGTTCTCAGGCGGGACAGCAAAGTCAACAACCGTCTGCGCCGACGAAGACAACCGACGGTTCTCGTTAG
CDS Sequence
- >Bra037742
ATGGAACATCAAGGTTGGAATTTTGAGGAGAATTACAATTTGTCCAACAATAGGAGACCTTTAAGGCCACAAGATGAACTAGTAGAGTTGTTATGGCGAGATGGGCAAGTGGTTCTACAGAGCCAAACTAACAGAGAGCAAACCCAAGCCCAAACTGTGAAACATGATCATCATCAAGAAACCCTAAGATCCCAAACATTTCTTGACGATCAAGAAACCGTCTCTTGGCTACAATACCCTCCATATGAAGACCAATTCATAACCGACGGCTTCTCATCTCATTTCTTCTCAACCGGTAATCCCCTGGAGAGACCAGCCCCAGAGACGGTTAAGCACGAGGCCGGTCCTGACCCTCCAGATCAGGCCATGCCTCCTCCTAAGTTTAGGTTAACGAATTCATCATCAAGTGTCAAAGAACTAGGAAAGGAACAATACTCGGTGGTGACCGTTGGACCGAGCCATTGCGGAAGCAGCCAATCTCATAACAATCTTGATGTCTCAATGCGTCATGATCGGAGCAAAACTGTCAATGAAAGGCTTTACCATAACGCAGGTTCATCATCAGGTGGCTCCTCTGGTTGCAGCTTTGGCAAGAACATCAAAGAAATGGCTGGCGTACAAAGCATTACAACAGACCGTAAGAGAAAACATATAATAGACACTGATGGATATGTGTCTCAGTCAGATGTAATAGGTAACAAATCGAACCAACCATCAGGATCAACGCGCAGGAGTCGAGCAGCTGAAGTTCATAATCTCTCCGAAAGGAGGAGAAGAGATAGGATCAATGAGAGAATGAAGGCTTTGCAAGAACTAATACCTCACTGCACTAAAACCGATAAAGCATCCATTTTGGACGAAGCCATAGACTACATGAAGTCACTTAAGTTACAACTTCAAGTTATGTGGATGGGGAATGGAATGGCTGCTGCTGCGACAGCTCCGATGATGCTCCCTGACGTACAACCTCAGCCGTTCATCCGCCAGATGCAGAGCCCGGTACAGCTGCCTCGATTTCCGGTTATGAACAATCCCGGTATAGTTTGTCAAAACCCGGTACAAAACCAAGTTTTCTCCAATCGGTTTGATAGATACATTGGCGTATTCCCACAGATGCAGGCTGCGTCTCAGCCGATGGCGATGCTGAGATTTGGTTCTCAGGCGGGACAGCAAAGTCAACAACCGTCTGCGCCGACGAAGACAACCGACGGTTCTCGTTAG
Protein Sequence
- >Bra037742
MEHQGWNFEENYNLSNNRRPLRPQDELVELLWRDGQVVLQSQTNREQTQAQTVKHDHHQETLRSQTFLDDQETVSWLQYPPYEDQFITDGFSSHFFSTGNPLERPAPETVKHEAGPDPPDQAMPPPKFRLTNSSSSVKELGKEQYSVVTVGPSHCGSSQSHNNLDVSMRHDRSKTVNERLYHNAGSSSGGSSGCSFGKNIKEMAGVQSITTDRKRKHIIDTDGYVSQSDVIGNKSNQPSGSTRRSRAAEVHNLSERRRRDRINERMKALQELIPHCTKTDKASILDEAIDYMKSLKLQLQVMWMGNGMAAAATAPMMLPDVQPQPFIRQMQSPVQLPRFPVMNNPGIVCQNPVQNQVFSNRFDRYIGVFPQMQAASQPMAMLRFGSQAGQQSQQPSAPTKTTDGSR